Hg_chrom7_TN10mRNA_14463
Organism: Heterodera glycines Gene Locus: chr7:6781437-6786264 Feature type: polypeptideProtein Sequence
Length: 735
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.902 | 0.633 | 0.544 | 1.314 | 0.567 | 0.907 | 0.567 | 1.565 | 0.786 | 2.592 | 0.289 | 1.441 | 1.436 | 1.334 | 1.166 | 1.186 | 0.758 | 0.804 | 2.093 | 0.6 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13654
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane|endoplasmic_reticulum
|
nucleus
|
RVLKRRF
|
— | — | — | — |
1-23
|
0.981
|
1.000
|
10.000
|
10.000
|
0.041
|
0.041
|
0.008
|
0.135
|
0.635
|
0.543
|
0.508
|
0.007
|
0.696
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011537
|
1.000
|
1.000
|
Hsc_gene_12510.t2
|
Hsc_gene_12510.t1;Hsc_gene_12510.t2;Hsc_gene_12510.t3
|
— |
Q8BML2.1 O-acyltransferase like protein [Mus musculus]
|
KAI1721393.1 nose resistant to fluoxetine protein 6 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR006621+104-223_114-205+|IPR052728+62-694+
|
SM00703+104-223+
|
PF20146+114-205+Nose_resistant-to-fluoxetine_protein,_N-terminal_domain
|
— |
PTHR11161+62-694+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-735
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.781
|
82428.250
|
8.140
|
20.500
|
17.143
|
13.061
|
36.327
|
63.673
|
10.748
|
6.395
|
47.211
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
2239.951
|
1986.837
|
2450.596
|
925.293
|
1639.601
|
2430.165
|
6234.109
|
1688.739
|
813.963
|
2681.063
|
1880.877
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.240
|
-1.297
|
0.793
|
0.581
|
1.371
|
-0.627
|
2.026
|
— | — | — | — | — |