SCN Proteipedia

Hg_chrom7_TN10mRNA_14464

Organism: Heterodera glycines Gene Locus: chr7:6786650-6790142 Feature type: polypeptide

Protein Sequence

Length: 561

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.928	0.995	0.778	0.307	0.624	1.097	1.231	1.872	0.555	0.819	0.324	1.468	1.089	1.405	0.728	1.732	0.964	0.378	0.274	0.891	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13655	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	0.992

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.776	0.199	0.021	0.406	0.075	0.072	0.070	0.016	0.076	0.107

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011538	1.000	1.000	Hsc_gene_12509.t1	Hsc_gene_12509.t1	—	Q98875.1 Homeobox protein Dlx1a [Danio rerio]	KAF7623524.1 Homeobox domain-containing protein [Meloidogyne graminicola]	No	-0.480

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000981\|GO:0003677\|GO:0006355	GO:0008150_0.937\|GO:0009987_0.805\|GO:0032501_0.759\|GO:0032502_0.748\|GO:0048856_0.726\|GO:0007275_0.719\|GO:0065007_0.685\|GO:0048731_0.681\|GO:0050789_0.668\|GO:0003674_0.658\|GO:0005488_0.643\|GO:0050794_0.643\|GO:0097159_0.643\|GO:0003676_0.634\|GO:0008152_0.603\|GO:0009058_0.603\|GO:0044238_0.594\|GO:0019222_0.589\|GO:0031323_0.589\|GO:0044237_0.589\|GO:0007399_0.586\|GO:0080090_0.586\|GO:0005575_0.584\|GO:0006139_0.583\|GO:0016070_0.583\|GO:0043170_0.583\|GO:0090304_0.583\|GO:0009059_0.578\|GO:0009889_0.578\|GO:0010467_0.578\|GO:0031326_0.578\|GO:0044249_0.578\|GO:0003677_0.576\|GO:0043565_0.576\|GO:0034654_0.574\|GO:0060255_0.573\|GO:0019219_0.572\|GO:0051252_0.572\|GO:0032774_0.571\|GO:0141187_0.571\|GO:0110165_0.570\|GO:0010556_0.566\|GO:0006351_0.560\|GO:0010468_0.557\|GO:0006355_0.556\|GO:2001141_0.556\|GO:0003690_0.550\|GO:1990837_0.550\|GO:0048513_0.532\|GO:0043226_0.514\|GO:0005622_0.503\|GO:0043229_0.503	IPR000047+228-237_237-253+\|IPR001356+197-257_199-261_200-256_200-257+\|IPR009057+191-258+\|IPR017970+232-255+\|IPR020479+221-232_236-246_246-255+\|IPR050460+76-419+	SM00389+199-261+	PF00046+200-256+Homeodomain	G3DSA:1.10.10.60:FF:000424+187-259+ANTP_homeobox_protein	PTHR24327+76-419+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	139-430	2.000	1-138;431-561	4rdu_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.885	57562.110	6.301	-2.500	17.469	11.052	44.029	55.971	9.447	8.021	64.171

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	380.397	1305.069	1177.376	554.330	188.160	147.476	136.784	611.533	18.270	105.263	67.980

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.376	-1.373	-0.979	-1.590	—	—	1.948	-2.019	—	5.137	—	—	—

No JSON data available for plots.

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