Hg_chrom7_TN10mRNA_14466
Organism: Heterodera glycines Gene Locus: chr7:6797968-6800552 Feature type: polypeptideProtein Sequence
Length: 356
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.621 | 0.719 | 0.664 | 1.065 | 0.983 | 0.648 | 0.702 | 1.124 | 1.373 | 2.012 | 0.979 | 1.487 | 1.248 | 0.432 | 1.204 | 0.843 | 0.875 | 1.021 | 1.729 | 1.57 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13657
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— |
RRESVSRLASKYRLK,KKGELSDDDKGGLEAKKTR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.192
|
0.266
|
0.011
|
0.143
|
0.807
|
0.365
|
0.572
|
0.011
|
0.245
|
0.021
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011540
|
1.000
|
1.000
|
Hsc_gene_12505.t1
|
Hsc_gene_12505.t1;Hsc_gene_12506.t1
|
— |
Q5HZE2.1 Ion channel TACAN [Rattus norvegicus]
|
KAI1721391.1 TMPIT-like protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.952|GO:0009987_0.757|GO:0005575_0.666|GO:0110165_0.664|GO:0016020_0.638|GO:0071944_0.611|GO:0005886_0.608|GO:0071840_0.581|GO:0016043_0.574|GO:0032502_0.568|GO:0030154_0.546|GO:0048869_0.546|GO:0044085_0.530|GO:0022607_0.524|GO:0043933_0.518|GO:0065003_0.517|GO:0045444_0.510|GO:0051259_0.510|GO:0051291_0.510
|
IPR012926+1-341_10-336+
|
— |
PF07851+10-336+TMPIT-like_protein
|
— |
PTHR21433+1-341+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-356
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.705
|
41160.410
|
8.874
|
14.000
|
24.157
|
14.326
|
41.011
|
58.989
|
14.607
|
9.551
|
41.292
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
midnightblue
|
948.404
|
912.835
|
703.651
|
655.618
|
697.975
|
809.282
|
2499.930
|
1113.082
|
406.156
|
1072.508
|
786.929
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.606
|
-0.615
|
— | — | — |
1.638
|
— |
1.307
|
— | — | — | — | — |
No JSON data available for plots.