SCN Proteipedia

Hg_chrom7_TN10mRNA_14467

Organism: Heterodera glycines Gene Locus: chr7:6801211-6805063 Feature type: polypeptide

Protein Sequence

Length: 682

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.648	0.852	0.587	0.91	0.684	0.714	0.82	0.733	1.922	1.565	0.444	1.466	2.688	0.987	0.598	1.068	0.697	1.111	2.481	1.164	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13658	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Not_Clustered	0.598

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	PFSKRLR	—	—	—	—	—	—	0.000	—	—	0.066	0.121	0.007	0.134	0.253	0.408	0.249	0.003	0.835	0.052

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011541	1.000	1.000	Hsc_gene_12504.t1	Hsc_gene_12504.t1	—	O76689.5 Sodium-dependent acetylcholine transporter [Caenorhabditis elegans]	KAI3409917.1 transporter [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0016020	GO:0008150_0.965\|GO:0009987_0.925\|GO:0006810_0.917\|GO:0051179_0.917\|GO:0051234_0.917\|GO:0055085_0.860\|GO:0003674_0.838\|GO:0005215_0.838\|GO:0022857_0.838\|GO:0005575_0.829\|GO:0110165_0.829\|GO:0016020_0.765\|GO:0071944_0.714\|GO:0005886_0.708\|GO:0071705_0.706\|GO:0006811_0.688\|GO:0034220_0.685\|GO:0098660_0.664\|GO:0015075_0.662\|GO:0006812_0.640\|GO:0098655_0.640\|GO:0008324_0.632\|GO:0098662_0.631\|GO:0030001_0.629\|GO:0015318_0.628\|GO:0006814_0.622\|GO:0035725_0.616\|GO:0015711_0.612\|GO:0022890_0.604\|GO:0015081_0.593\|GO:0046873_0.593\|GO:0015849_0.588\|GO:0022804_0.588\|GO:1903825_0.588\|GO:0015291_0.585\|GO:0046942_0.581\|GO:1905039_0.581\|GO:0008514_0.580\|GO:0015293_0.580\|GO:0015294_0.580\|GO:0022853_0.580\|GO:0003333_0.570\|GO:0006865_0.570\|GO:0015370_0.558\|GO:0005342_0.551\|GO:0046943_0.549\|GO:0015171_0.529	IPR000175+22-606_27-589_28-585_36-57_65-84_108-134_265-282_347-367_402-421_483-503_525-545+\|IPR037272+28-584+	—	PF00209+28-585+Sodium:neurotransmitter_symporter_family	—	PTHR11616+22-606+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-682	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.632	77540.970	5.627	-5.000	14.663	18.328	32.845	67.155	7.331	7.331	46.188

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	turquoise	2133.205	4278.218	1920.969	1601.246	1472.084	1292.446	3780.407	1909.687	417.887	2923.710	1849.785

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.385	-1.555	-0.153	-0.153	-0.173	1.558	0.459	1.126	-2.925	—	—	—	—

No JSON data available for plots.

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