Hg_chrom7_TN10mRNA_14468
Organism: Heterodera glycines Gene Locus: chr7:6805217-6807665 Feature type: polypeptideProtein Sequence
Length: 390
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.656 | 1.491 | 1.026 | 0.884 | 1.068 | 1.512 | 0.458 | 1.667 | 0.969 | 1.49 | 1.166 | 1.207 | 1.496 | 0.345 | 0.994 | 1.319 | 0.925 | 0.66 | 0.394 | 0.98 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13659
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.989
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
RKLPQLLALHLKRFKY,KRRVGTIAPKRFVTKLKRE
|
77-97
|
0.974
|
— | — | — | — |
0.000
|
— | — |
0.600
|
0.201
|
0.007
|
0.529
|
0.141
|
0.486
|
0.340
|
0.021
|
0.260
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011542
|
1.000
|
1.000
|
Hsc_gene_12503.t1
|
Hsc_gene_12503.t1
|
— |
P34547.3 Ubiquitin carboxyl-terminal hydrolase 46 [Caenorhabditis elegans]
|
KAI3409918.1 Ubiquitin carboxyl-terminal hydrolase 46 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004843|GO:0016579
|
GO:0008150_0.818|GO:0005575_0.752|GO:0110165_0.752|GO:0003674_0.727|GO:0005622_0.624|GO:0009987_0.595|GO:0003824_0.592|GO:0140096_0.583|GO:0016787_0.573|GO:0008233_0.558|GO:0019783_0.543|GO:0101005_0.543|GO:0065007_0.521|GO:0050789_0.513|GO:0016020_0.501
|
IPR001394+26-383+|IPR018200+26-41_316-334+|IPR028889+25-386+|IPR038765+23-386+|IPR050164+20-386+
|
— |
PF00443+26-383+Ubiquitin_carboxyl-terminal_hydrolase
|
— |
PTHR24006+20-386+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-390
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.697
|
44771.700
|
7.838
|
8.500
|
27.949
|
12.564
|
55.128
|
44.872
|
15.897
|
12.051
|
45.128
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey60
|
911.841
|
1314.074
|
620.972
|
792.984
|
886.065
|
836.481
|
876.700
|
694.899
|
801.593
|
1129.796
|
989.138
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.312
|
-0.866
|
0.462
|
0.128
|
— | — |
-0.370
|
0.476
|
— | — | — | — | — |
No JSON data available for plots.