Hg_chrom7_TN10mRNA_14469
Organism: Heterodera glycines Gene Locus: chr7:6808587-6812242 Feature type: polypeptideProtein Sequence
Length: 552
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.506 | 1.264 | 1.12 | 0.875 | 1.147 | 1.765 | 0.669 | 1.63 | 0.845 | 1.077 | 0.851 | 1.066 | 1.157 | 0.975 | 1.331 | 1.372 | 0.891 | 0.823 | 1.394 | 0.48 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13660
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRNSEREQTMNERPKWQRK,RKNQGGMRRGNFNWRGRRG
|
— | — |
27-56
|
0.993
|
— | — |
0.000
|
— | — |
0.775
|
0.134
|
0.003
|
0.478
|
0.088
|
0.027
|
0.078
|
0.007
|
0.018
|
0.018
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011543
|
1.000
|
1.000
|
Hsc_gene_12502.t1
|
Hsc_gene_12502.t1
|
— |
P38772.1 Box C/D snoRNA protein 1 [Saccharomyces cerevisiae S288C]
|
KAI6189936.1 HIT-type domain-containing protein [Aphelenchoides bicaudatus]
|
No
|
-0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.921|GO:0110165_0.910|GO:0016020_0.818|GO:0043226_0.816|GO:0043227_0.749|GO:0008150_0.743|GO:0009987_0.700|GO:0005622_0.681|GO:0003674_0.658|GO:0005488_0.643|GO:0043229_0.626|GO:0016043_0.559|GO:0043231_0.559|GO:0071840_0.559|GO:0005634_0.540|GO:0005737_0.534
|
IPR007529+33-61_36-70+|IPR051639+33-204+
|
— |
PF04438+33-61+HIT_zinc_finger
|
— |
PTHR13483+33-204+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
223-285;417-552
|
2.000
|
1-222;286-416
|
2n94_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.750
|
62837.240
|
6.866
|
4.000
|
28.442
|
10.870
|
55.797
|
44.203
|
15.399
|
13.043
|
49.638
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
1028.658
|
1330.468
|
1004.609
|
1310.193
|
1344.017
|
1013.081
|
1141.925
|
745.476
|
592.125
|
1097.621
|
880.980
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.635
|
-0.159
|
0.492
|
— |
-0.393
|
0.182
|
-0.546
|
0.756
|
— | — | — | — | — |
No JSON data available for plots.