Hg_chrom7_TN10mRNA_14470
Organism: Heterodera glycines Gene Locus: chr7:6812753-6815061 Feature type: polypeptideProtein Sequence
Length: 526
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.575 | 1.061 | 0.864 | 0.918 | 1.394 | 0.78 | 0.521 | 0.856 | 1.436 | 1.336 | 1.123 | 1.118 | 1.426 | 0.877 | 1.436 | 0.76 | 0.966 | 1.095 | 1.755 | 0.727 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13661
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.982
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
nucleus
|
KKIREKIIRSKSPYAKSRR,RRVKSCYLKRKWAVRKQVK
|
— | — | — | — |
1-26
|
0.530
|
0.999
|
1.000
|
1.000
|
0.188
|
0.072
|
0.013
|
0.323
|
0.349
|
0.388
|
0.407
|
0.148
|
0.729
|
0.117
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011544
|
1.000
|
1.000
|
Hsc_gene_12501.t1
|
Hsc_gene_12501.t1
|
— | — |
KAF7639329.1 Ig-like domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR007110+390-472+|IPR013783+398-486+|IPR036179+399-483+|IPR039311+17-518+
|
— | — | — |
PTHR32178+17-518+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-526
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.668
|
61024.610
|
8.359
|
11.500
|
29.278
|
11.597
|
48.099
|
51.901
|
16.160
|
13.118
|
44.297
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
463.416
|
583.010
|
370.393
|
249.426
|
525.274
|
441.757
|
900.197
|
167.576
|
25.426
|
794.261
|
464.760
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.886
|
-1.362
|
-0.460
|
1.044
|
— |
1.037
|
-1.507
|
2.569
|
-5.106
|
— | — | — | — |