Hg_chrom7_TN10mRNA_14474
Organism: Heterodera glycines Gene Locus: chr7:6822177-6827715 Feature type: polypeptideProtein Sequence
Length: 889
(Signal peptide: 1-34)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.203 | 0.628 | 1.023 | 0.853 | 0.862 | 1.183 | 0.75 | 1.35 | 0.725 | 1.824 | 0.409 | 0.926 | 1.531 | 0.995 | 1.722 | 1.286 | 0.516 | 0.818 | 0.779 | 0.397 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13664
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.700
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
transmembrane_domain
|
cell_membrane
|
chloroplast
|
— | — | — |
18-44
|
0.951
|
1-34
|
0.857
|
0.793
|
4.000
|
4.000
|
0.115
|
0.063
|
0.012
|
0.232
|
0.176
|
0.440
|
0.317
|
0.003
|
0.751
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011546
|
1.000
|
1.000
|
Hsc_gene_12495.t1
|
Hsc_gene_12495.t1
|
— | — |
KAI1712745.1 prominin domain-containing protein [Ditylenchus destructor]
|
No
|
0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.957|GO:0005575_0.936|GO:0110165_0.934|GO:0009987_0.909|GO:0016020_0.881|GO:0071944_0.878|GO:0065007_0.870|GO:0005886_0.865|GO:0003674_0.847|GO:0050789_0.844|GO:0032501_0.824|GO:0050794_0.823|GO:0005622_0.793|GO:0032502_0.787|GO:0048856_0.787|GO:0005488_0.781|GO:0007275_0.764|GO:0005515_0.752|GO:0043226_0.752|GO:0048731_0.751|GO:0048518_0.738|GO:0030154_0.734|GO:0048869_0.734|GO:0005737_0.730|GO:0048522_0.728|GO:0007399_0.725|GO:0043229_0.725|GO:0022008_0.719|GO:0051239_0.712|GO:0048513_0.710|GO:0048699_0.704|GO:0030182_0.703|GO:0009653_0.702|GO:0043227_0.700|GO:0042592_0.694|GO:0050793_0.693|GO:0009888_0.692|GO:0043231_0.688|GO:0060429_0.684|GO:2000026_0.684|GO:0035295_0.683|GO:0045595_0.683|GO:0051094_0.682|GO:0048871_0.680|GO:0030855_0.679|GO:0045597_0.678|GO:0009887_0.677|GO:0001654_0.676|GO:0007423_0.676|GO:0048880_0.676|GO:0150063_0.676|GO:0001894_0.674|GO:0060249_0.674|GO:0072001_0.674|GO:0001822_0.673|GO:0001754_0.670|GO:0001895_0.670|GO:0003407_0.670|GO:0030856_0.670|GO:0030858_0.670|GO:0032835_0.670|GO:0035850_0.670|GO:0043010_0.670|GO:0045494_0.670|GO:0046530_0.670|GO:0048592_0.670|GO:0048593_0.670|GO:0060041_0.670|GO:0060042_0.670|GO:0060219_0.670|GO:0061005_0.670|GO:0061318_0.670|GO:0061326_0.670|GO:0072006_0.670|GO:0072009_0.670|GO:0072010_0.670|GO:0072073_0.670|GO:0072080_0.670|GO:0072112_0.670|GO:0072139_0.670|GO:0072160_0.670|GO:0072182_0.670|GO:0072311_0.670|GO:0090596_0.670|GO:2000696_0.670|GO:2000698_0.670|GO:2000768_0.670|GO:0005773_0.659|GO:0050839_0.655|GO:0008092_0.650|GO:0042805_0.650|GO:0045296_0.650|GO:0012505_0.648|GO:0098590_0.614|GO:0032991_0.606|GO:0031982_0.595|GO:0031090_0.594|GO:0042995_0.591|GO:0005576_0.590|GO:0120025_0.590|GO:0043005_0.578|GO:0005783_0.573|GO:0005615_0.571|GO:0043230_0.567|GO:0065010_0.566|GO:0098588_0.566|GO:1903561_0.564|GO:0009986_0.562|GO:0070062_0.562|GO:0005929_0.550|GO:0030990_0.550|GO:0001750_0.540|GO:0005793_0.540|GO:0031253_0.540|GO:0042622_0.540|GO:0060170_0.540|GO:0097730_0.540|GO:0097731_0.540|GO:0097733_0.540
|
IPR008795+19-650_80-650+
|
— |
PF05478+80-650+Prominin
|
— |
PTHR22730+19-650+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
820-889
|
1.000
|
1-819
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.745
|
98354.510
|
7.776
|
15.000
|
24.634
|
10.574
|
44.094
|
55.906
|
13.836
|
10.799
|
50.169
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
brown
|
1626.354
|
1263.097
|
1797.307
|
922.120
|
1962.835
|
3996.840
|
1351.354
|
7212.810
|
53.287
|
135.446
|
100.235
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.281
|
-0.591
|
-0.855
|
1.058
|
1.041
|
-1.555
|
0.748
|
-2.274
|
— |
4.322
|
4.316
|
— | — |