Hg_chrom7_TN10mRNA_14475
Organism: Heterodera glycines Gene Locus: chr7:6832987-6835061 Feature type: polypeptideProtein Sequence
Length: 370
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.849 | 0.754 | 0.835 | 0.373 | 2.387 | 0.485 | 0.676 | 0.541 | 0.781 | 0.986 | 2.334 | 0.636 | 1.276 | 1.091 | 1.103 | 0.965 | 0.709 | 0.737 | 0.624 | 0.318 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13665
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.838
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular|endoplasmic_reticulum
|
— |
KEKREKEEEGKKKKKDAESVTEKKTAKSEKKAKKEEPKAEDEVGKGGCPHAAGKAAAKRKKEEEEKKKQAAEKSTEKGETAEKKTDAKKAEQQKKKKGAEKEKG
|
58-78
|
1.000
|
8-48
|
1.000
|
— | — |
0.001
|
— | — |
0.185
|
0.150
|
0.116
|
0.248
|
0.673
|
0.105
|
0.279
|
0.038
|
0.090
|
0.689
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004615
|
2.000
|
1.000
|
Hsc_gene_12492.t1
|
— | — |
H9D1R1.1 Thioredoxin domain-containing protein 12 [Epinephelus coioides]
|
KAF7633206.1 Thioredoxin domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.828|GO:0110165_0.828|GO:0005622_0.787|GO:0043226_0.773|GO:0016020_0.771|GO:0043229_0.759|GO:0043227_0.694|GO:0005737_0.675|GO:0043231_0.660|GO:0005886_0.651|GO:0071944_0.651|GO:0008150_0.590|GO:0031974_0.556|GO:0043233_0.554|GO:0070013_0.554|GO:0003674_0.510
|
IPR017937+144-162+|IPR036249+126-248+|IPR051099+68-358+
|
— |
PF13899+126-208+Thioredoxin-like
|
— |
PTHR15337+68-358+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
217-370
|
1.000
|
1-216
|
2k8v_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.778
|
41974.780
|
9.341
|
9.000
|
40.811
|
7.568
|
57.027
|
42.973
|
21.892
|
18.919
|
43.514
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
1798.007
|
590.289
|
1355.356
|
1464.007
|
3545.238
|
5071.438
|
1165.874
|
1097.845
|
323.341
|
2265.010
|
1432.866
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.970
|
1.173
|
0.220
|
1.244
|
0.532
|
-2.111
|
-2.314
|
0.230
|
-2.918
|
— | — | — | — |
No JSON data available for plots.