Hg_chrom7_TN10mRNA_14477
Organism: Heterodera glycines Gene Locus: chr7:6835274-6838124 Feature type: polypeptideProtein Sequence
Length: 506
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.218 | 1.057 | 0.323 | 0.954 | 0.692 | 0.811 | 0.918 | 0.692 | 1.405 | 1.389 | 0.389 | 1.511 | 1.757 | 0.608 | 1.694 | 1.637 | 0.454 | 0.928 | 1.368 | 0.698 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13666
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.911
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RRRKRRY,RSAKRRPHS,RRKIMCNKLGADSANRFRK,RKIMCNKLGADSANRFRKQ
|
— | — | — | — | — | — |
0.000
|
— | — |
0.104
|
0.087
|
0.033
|
0.142
|
0.277
|
0.165
|
0.178
|
0.016
|
0.830
|
0.144
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011547
|
1.000
|
1.000
|
Hsc_gene_12491.t1
|
Hsc_gene_12491.t1
|
— |
Q10042.3 Probable G-protein coupled receptor K01A12.3 [Caenorhabditis elegans]
|
KAI1708922.1 serpentine type 7TM GPCR chemoreceptor srx domain-containing protein [Ditylenchus destructor]
|
No
|
-0.230
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
— |
IPR000276+16-40_49-70_125-147_297-323+|IPR019430+125-319+
|
— |
PF10328+125-319+Serpentine_type_7TM_GPCR_chemoreceptor_Srx
|
— |
PTHR24246+15-433+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
506-506
|
1.000
|
1-505
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.872
|
55709.550
|
10.260
|
28.500
|
18.182
|
11.858
|
40.119
|
59.881
|
12.253
|
5.929
|
50.791
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
134.909
|
75.622
|
268.863
|
147.373
|
99.039
|
32.649
|
59.327
|
111.103
|
10.668
|
284.484
|
167.134
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.600
|
0.825
|
-0.758
|
-0.605
|
-1.587
|
0.871
|
1.666
|
-0.765
|
— | — | — | — | — |
No JSON data available for plots.