Hg_chrom7_TN10mRNA_14478
Organism: Heterodera glycines Gene Locus: chr7:6838807-6840947 Feature type: polypeptideProtein Sequence
Length: 395
(Signal peptide: 1-36)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.971 | 0.765 | 0.69 | 0.786 | 0.844 | 1.168 | 0.844 | 1.519 | 0.788 | 1.197 | 0.652 | 0.894 | 1.195 | 1.217 | 2.48 | 0.976 | 1.038 | 0.882 | 1.168 | 0.298 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13667
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.512
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus|extracellular
|
chloroplast
|
HSHHVKKRRR,RRCPPPSIVPTPNGRRARA
|
— | — |
14-74
|
0.735
|
1-36
|
0.759
|
0.938
|
0.000
|
0.000
|
0.550
|
0.074
|
0.031
|
0.257
|
0.043
|
0.057
|
0.110
|
0.005
|
0.126
|
0.766
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011548
|
1.000
|
1.000
|
Hsc_gene_12490.t1
|
Hsc_gene_12490.t1
|
— | — |
KAI3413924.1 hypothetical protein GPALN_011398 [Globodera pallida]
|
WP_100986110
|
0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR008996+159-287+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
75-155
|
2.000
|
1-74;156-395
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.637
|
44499.970
|
11.335
|
36.000
|
28.354
|
9.873
|
49.367
|
50.633
|
19.494
|
8.861
|
50.127
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
90.574
|
83.661
|
59.895
|
59.251
|
87.421
|
86.460
|
60.964
|
69.827
|
35.556
|
179.289
|
117.689
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.711
|
-0.635
|
— |
0.527
|
— |
-0.493
|
-0.414
|
— | — | — | — | — | — |