Hg_chrom7_TN10mRNA_14485
Organism: Heterodera glycines Gene Locus: chr7:6872994-6876328 Feature type: polypeptideProtein Sequence
Length: 423
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.632 | 1.484 | 0.903 | 0.408 | 1.221 | 1.697 | 0.704 | 1.418 | 1.366 | 1.438 | 0.824 | 0.834 | 1.248 | 0.773 | 1.496 | 1.385 | 0.388 | 0.681 | 0.727 | 0.695 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13674
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.302
|
0.098
|
0.010
|
0.661
|
0.264
|
0.303
|
0.186
|
0.004
|
0.325
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011553
|
1.000
|
1.000
|
Hsc_gene_12483.t1
|
Hsc_gene_12483.t1
|
— |
O08967.1 Cytohesin-3 [Mus musculus]
|
KAI3413932.1 Cytohesin-1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005085|GO:0032012
|
GO:0005575_0.894|GO:0110165_0.894|GO:0016020_0.784|GO:0008150_0.766|GO:0005622_0.743|GO:0009987_0.701|GO:0043226_0.659|GO:0005737_0.625|GO:0043229_0.622|GO:0043227_0.583|GO:0071944_0.572|GO:0005886_0.566|GO:0043231_0.558
|
IPR000904+52-235_56-237_65-236_68-237+|IPR001849+255-373_256-375_257-372+|IPR011993+255-383+|IPR023394+134-251+|IPR035999+61-243+
|
SM00222+56-237+|SM00233+256-375+
|
PF00169+257-372+PH_domain|PF01369+65-236+Sec7_domain
|
G3DSA:1.10.1000.11:FF:000002+133-250+Cytohesin_1
|
PTHR10663+52-271+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-19
|
1.000
|
20-423
|
1s9d_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.828
|
48228.430
|
8.081
|
8.000
|
27.896
|
10.638
|
52.955
|
47.045
|
15.603
|
12.293
|
44.444
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1690.568
|
1598.120
|
1596.201
|
1309.564
|
1137.827
|
1045.330
|
960.139
|
1517.283
|
880.063
|
3299.512
|
2262.605
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.232
|
-0.424
|
-0.177
|
-0.235
|
— | — |
0.432
|
-0.517
|
-2.012
|
— | — | — | — |
No JSON data available for plots.