SCN Proteipedia

Hg_chrom7_TN10mRNA_14486

Organism: Heterodera glycines Gene Locus: chr7:6876756-6884247 Feature type: polypeptide

Protein Sequence

Length: 1,116

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.761	1.021	1.059	1.143	1.359	1.333	0.448	1.478	0.996	1.235	0.937	2.108	1.195	0.707	1.573	0.819	0.72	0.991	1.241	0.738	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13675	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	24-J3_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	nucleus	—	KKWK	—	—	—	—	—	—	0.000	—	—	0.566	0.226	0.010	0.454	0.066	0.151	0.082	0.057	0.058	0.074

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004617	2.000	1.000	Hsc_gene_12482.t1	Hsc_gene_12361.t1;Hsc_gene_12482.t1	—	O95786.2 Antiviral innate immune response receptor RIG-I [Homo sapiens]	KAI3421084.1 Interferon-induced helicase C domain-containing protein 1 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0005524	GO:0008150_0.929\|GO:0009987_0.885\|GO:0065007_0.813\|GO:0050789_0.803\|GO:0005575_0.802\|GO:0110165_0.793\|GO:0008152_0.781\|GO:0003674_0.760\|GO:0005622_0.748\|GO:0043170_0.747\|GO:0044237_0.733\|GO:0009058_0.729\|GO:0050794_0.728\|GO:0044249_0.714\|GO:0009059_0.704\|GO:0019222_0.693\|GO:0060255_0.679\|GO:0050896_0.655\|GO:0005488_0.635\|GO:0010467_0.633\|GO:0031323_0.611\|GO:0044238_0.598\|GO:0032501_0.597\|GO:0009889_0.595\|GO:0010556_0.595\|GO:0031326_0.595\|GO:0010468_0.593\|GO:0005737_0.576\|GO:0006950_0.553\|GO:0048519_0.546\|GO:0043226_0.534\|GO:0016020_0.531\|GO:0051716_0.522\|GO:0097159_0.501	IPR001650+739-924_744-864_777-867+\|IPR011545+341-511+\|IPR014001+336-537_348-529+\|IPR021673+930-1064_945-1059+\|IPR027417+340-913_390-882_557-880+\|IPR038557+932-1081+\|IPR041204+558-707+\|IPR051363+320-1088+	SM00487+336-537+\|SM00490+777-867+	PF00270+341-511+DEAD/DEAH_box_helicase\|PF00271+744-864+Helicase_conserved_C-terminal_domain\|PF11648+945-1059+C-terminal_domain_of_RIG-I\|PF18119+558-707+RIG-I_receptor_C-terminal_domain	—	PTHR14074+320-1088+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-1116	3b6e_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.517	129652.610	7.365	15.500	30.824	11.380	50.538	49.462	16.846	13.978	44.176

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	turquoise	1176.449	234.083	418.234	678.598	1474.264	855.680	2432.156	227.191	142.954	2669.671	1586.792

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.605	1.398	0.809	1.088	-0.771	1.519	-2.022	3.566	-4.340	—	—	—	—

No JSON data available for plots.

Back to Browser