Hg_chrom7_TN10mRNA_14487
Organism: Heterodera glycines Gene Locus: chr7:6884428-6887402 Feature type: polypeptideProtein Sequence
Length: 508
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.19 | 0.595 | 0.787 | 0.068 | 1.28 | 1.615 | 0.82 | 0.886 | 0.7 | 0.771 | 0.954 | 2.316 | 0.601 | 2.309 | 1.527 | 0.956 | 0.774 | 0.954 | 0.0 | 0.463 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13676
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRVK,KKTGATAPSQKRHKH,RRRVVRFSGDERMQQKRRR,RRVVRFSGDERMQQKRRRE,DRERKQQRAKELKRNKKQRTM
|
— | — | — | — | — | — |
0.000
|
— | — |
0.650
|
0.072
|
0.016
|
0.387
|
0.051
|
0.052
|
0.104
|
0.016
|
0.059
|
0.102
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011554
|
1.000
|
1.000
|
Hsc_gene_12481.t1
|
Hsc_gene_12481.t1
|
— |
Q923D5.2 WW domain-binding protein 11 [Mus musculus]
|
KHN74275.1 WW domain-binding protein 11 [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006396
|
GO:0005575_0.861|GO:0110165_0.858|GO:0005622_0.819|GO:0016020_0.803|GO:0043226_0.791|GO:0043229_0.779|GO:0008150_0.727|GO:0043227_0.713|GO:0043231_0.687|GO:0005634_0.684|GO:0003674_0.683|GO:0005488_0.683|GO:0005515_0.631|GO:0005737_0.577|GO:0031974_0.531|GO:0031981_0.531|GO:0043233_0.531|GO:0070013_0.531
|
IPR019007+11-67+
|
— |
PF09429+11-67+WW_domain_binding_protein_11
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-66;125-508
|
1.000
|
67-124
|
7abg_X
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.918
|
55359.940
|
9.923
|
13.500
|
27.559
|
5.512
|
47.835
|
52.165
|
15.551
|
12.008
|
53.937
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1047.821
|
2171.341
|
1213.956
|
1046.062
|
1068.219
|
999.052
|
1223.640
|
677.226
|
1390.960
|
391.185
|
819.660
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.067
|
-1.191
|
— | — | — |
0.303
|
-0.663
|
0.995
|
— | — | — | — | — |
No JSON data available for plots.