Hg_chrom7_TN10mRNA_14488
Organism: Heterodera glycines Gene Locus: chr7:6890147-6894933 Feature type: polypeptideProtein Sequence
Length: 894
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.806 | 0.858 | 0.854 | 0.231 | 1.268 | 1.147 | 0.626 | 1.342 | 1.094 | 0.983 | 0.576 | 1.316 | 1.522 | 1.828 | 1.484 | 0.959 | 0.825 | 0.898 | 1.807 | 1.02 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13677
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
— |
KRKL
|
— | — | — | — |
1-24
|
0.991
|
1.000
|
0.000
|
0.000
|
0.227
|
0.341
|
0.030
|
0.378
|
0.230
|
0.120
|
0.139
|
0.114
|
0.152
|
0.150
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011555
|
1.000
|
1.000
|
Hsc_gene_12479.t1
|
Hsc_gene_12479.t1
|
— |
Q93VD5.1 Carotenoid cleavage dioxygenase 8 homolog A, chloroplastic [Oryza sativa Japonica Group]
|
KAI1722607.1 retinal pigment epithelial membrane protein [Ditylenchus destructor]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016702
|
GO:0008150_0.913|GO:0003674_0.855|GO:0009987_0.821|GO:0008152_0.719|GO:0003824_0.711|GO:0044238_0.701|GO:0005575_0.697|GO:0110165_0.695|GO:0044237_0.686|GO:0006629_0.599|GO:0005622_0.598|GO:0044255_0.594|GO:0006720_0.588|GO:0016491_0.578|GO:0016020_0.576|GO:0016701_0.570|GO:0016702_0.570|GO:0051213_0.570|GO:0006721_0.539|GO:0005737_0.518
|
IPR004294+52-562_52-563+
|
— |
PF03055+52-562+Retinal_pigment_epithelial_membrane_protein
|
— |
PTHR10543+52-563+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
567-737;797-894
|
2.000
|
1-566;738-796
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.715
|
102453.080
|
6.581
|
1.000
|
26.063
|
13.982
|
45.973
|
54.027
|
13.758
|
12.304
|
48.434
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
turquoise
|
229.832
|
95.724
|
148.943
|
104.334
|
219.404
|
652.221
|
443.727
|
118.012
|
98.940
|
262.921
|
192.644
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.409
|
— |
-0.406
|
1.038
|
1.587
|
-0.544
|
-2.572
|
2.054
|
— | — | — | — | — |