Hg_chrom7_TN10mRNA_14489
Organism: Heterodera glycines Gene Locus: chr7:6901144-6906538 Feature type: polypeptideProtein Sequence
Length: 1,126
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.167 | 1.301 | 0.856 | 0.888 | 0.829 | 1.275 | 0.983 | 1.199 | 0.691 | 1.14 | 0.565 | 1.254 | 0.913 | 0.734 | 1.686 | 1.243 | 1.238 | 0.754 | 0.751 | 0.444 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13678
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KRQK,RKKK,KRGTVRRTATTKKLQK,RRSLVPIIEEGRKPSR,RRLRERESARTARKRHA,RRVKGWQRKRTLRLMRR,RKPSRALLKRATRQMRR
|
— | — | — | — | — | — |
0.001
|
— | — |
0.109
|
0.157
|
0.007
|
0.169
|
0.172
|
0.242
|
0.150
|
0.009
|
0.890
|
0.049
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011556
|
1.000
|
1.000
|
Hsc_gene_12477.t1
|
Hsc_gene_12477.t1
|
— |
Q6RYS9.1 Dopamine receptor 3 [Caenorhabditis elegans]
|
KAI1712706.1 7 transmembrane receptor (rhodopsin family) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.976|GO:0009987_0.922|GO:0065007_0.896|GO:0050789_0.886|GO:0050794_0.857|GO:0005575_0.824|GO:0110165_0.823|GO:0003674_0.810|GO:0007154_0.761|GO:0023052_0.761|GO:0050896_0.761|GO:0016020_0.757|GO:0071944_0.751|GO:0005886_0.743|GO:0005488_0.710|GO:0051716_0.708|GO:0032501_0.689|GO:0051179_0.686|GO:0007165_0.675|GO:0006810_0.656|GO:0051234_0.656|GO:0060089_0.609|GO:0038023_0.608|GO:0010646_0.606|GO:0023051_0.604|GO:0048519_0.588|GO:0048518_0.586|GO:0007186_0.584|GO:0005622_0.562|GO:0048523_0.541|GO:0007267_0.539|GO:0032879_0.530|GO:0003008_0.520|GO:0097159_0.514|GO:0042221_0.512|GO:0048522_0.511|GO:0048583_0.509|GO:0036094_0.504|GO:0043167_0.504
|
IPR000276+51-75_60-1103_66-247_84-105_130-152_136-152_166-187_960-1088_1070-1096+|IPR017452+66-244_1015-1088+
|
SM01381+60-1103+
|
PF00001+66-247_960-1088+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR24248+47-1105+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
283-895;1118-1126
|
2.000
|
1-282;896-1117
|
9bsb_R
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.906
|
122634.610
|
9.070
|
39.500
|
24.067
|
8.171
|
50.888
|
49.112
|
14.387
|
9.680
|
56.217
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1018.092
|
2194.348
|
3315.055
|
2414.298
|
746.721
|
317.368
|
335.654
|
1336.210
|
156.130
|
339.685
|
261.019
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.366
|
— |
-0.349
|
-1.725
|
-1.220
|
— |
1.975
|
-1.853
|
— |
4.146
|
— | — | — |
No JSON data available for plots.