Hg_chrom7_TN10mRNA_14492
Organism: Heterodera glycines Gene Locus: chr7:6914927-6918358 Feature type: polypeptideProtein Sequence
Length: 375
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.147 | 0.558 | 0.533 | 0.92 | 0.667 | 0.479 | 0.984 | 1.333 | 1.481 | 1.55 | 0.323 | 1.412 | 1.259 | 0.872 | 1.361 | 0.876 | 1.311 | 1.131 | 1.641 | 0.941 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13680
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.952
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.065
|
0.091
|
0.021
|
0.079
|
0.300
|
0.157
|
0.087
|
0.082
|
0.904
|
0.021
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011558
|
1.000
|
1.000
|
Hsc_gene_12476.t1
|
Hsc_gene_12476.t1
|
— |
Q8SWR3.1 Sex peptide receptor [Drosophila melanogaster]
|
KAI1712707.1 serpentine type 7TM GPCR chemoreceptor srw domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.922|GO:0005575_0.841|GO:0110165_0.841|GO:0009987_0.836|GO:0003674_0.770|GO:0065007_0.752|GO:0050789_0.726|GO:0050896_0.708|GO:0016020_0.695|GO:0051716_0.679|GO:0007154_0.678|GO:0050794_0.677|GO:0023052_0.673|GO:0071944_0.669|GO:0005886_0.648|GO:0007165_0.637|GO:0007186_0.608|GO:0060089_0.566|GO:0038023_0.564|GO:0032501_0.521|GO:0004888_0.508
|
IPR000276+44-68_63-363_76-97_132-154+|IPR017452+59-262+|IPR053071+12-366+
|
— |
PF00001+63-363+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR47023+12-366+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-375
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.777
|
41164.020
|
8.623
|
12.000
|
18.400
|
12.533
|
36.800
|
63.200
|
11.467
|
6.933
|
52.267
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
95.736
|
230.535
|
276.862
|
250.935
|
46.340
|
15.904
|
15.728
|
52.123
|
11.377
|
77.150
|
48.962
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
-2.468
|
-1.527
|
— |
1.612
|
-1.585
|
— |
4.669
|
— | — | — |
No JSON data available for plots.