Hg_chrom7_TN10mRNA_14495
Organism: Heterodera glycines Gene Locus: chr7:6929238-6932204 Feature type: polypeptideProtein Sequence
Length: 601
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.103 | 1.083 | 0.696 | 0.574 | 0.721 | 0.811 | 0.753 | 1.082 | 0.998 | 1.574 | 0.454 | 1.566 | 1.71 | 0.8 | 1.053 | 1.093 | 0.9 | 1.462 | 1.152 | 0.832 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13683
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.884
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
AAAED,RTLKRWR,KRWRSGGDTKKRRRKSN
|
— | — | — | — | — | — |
0.000
|
— | — |
0.083
|
0.122
|
0.023
|
0.136
|
0.233
|
0.386
|
0.372
|
0.051
|
0.786
|
0.073
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011560
|
1.000
|
1.000
|
Hsc_gene_12473.t1
|
Hsc_gene_12473.t1
|
— |
O76082.1 Organic cation/carnitine transporter 2 [Homo sapiens]
|
KAF7636039.1 Transporter, major facilitator family protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0022857|GO:0055085
|
GO:0008150_0.962|GO:0009987_0.930|GO:0006810_0.845|GO:0051179_0.845|GO:0051234_0.845|GO:0003674_0.812|GO:0055085_0.803|GO:0005575_0.789|GO:0110165_0.789|GO:0016020_0.759|GO:0071944_0.756|GO:0005215_0.752|GO:0022857_0.752|GO:0005886_0.746|GO:0071705_0.571
|
IPR011701+85-439+|IPR020846+37-473+|IPR036259+29-477_29-481+
|
— |
PF07690+85-439+Major_Facilitator_Superfamily
|
— |
PTHR24064+24-476+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
505-601
|
1.000
|
1-504
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.714
|
66324.740
|
7.449
|
6.500
|
18.469
|
12.646
|
39.434
|
60.566
|
10.316
|
8.153
|
52.912
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
brown
|
655.914
|
343.674
|
921.257
|
815.589
|
817.842
|
1181.887
|
1733.425
|
920.912
|
214.232
|
183.481
|
196.660
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.194
|
1.110
|
— | — |
0.546
|
0.563
|
-0.464
|
1.054
|
— | — | — | — | — |
No JSON data available for plots.