Hg_chrom7_TN10mRNA_14497
Organism: Heterodera glycines Gene Locus: chr7:6932502-6935156 Feature type: polypeptideProtein Sequence
Length: 428
(Signal peptide: 1-33)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.706 | 0.706 | 1.147 | 0.161 | 0.662 | 0.959 | 1.752 | 1.402 | 0.935 | 0.789 | 0.743 | 0.962 | 1.558 | 0.944 | 1.335 | 1.669 | 0.958 | 0.496 | 1.977 | 0.55 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13684
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-33
|
— |
0.667
|
— |
0.000
|
0.189
|
0.305
|
0.154
|
0.285
|
0.259
|
0.083
|
0.137
|
0.094
|
0.321
|
0.940
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004618
|
2.000
|
1.000
|
Hsc_gene_12472.t1
|
— | — |
G5EBU3.1 Matrix metalloproteinase-C [Caenorhabditis elegans]
|
KAI1723312.1 matrixin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270|GO:0031012
|
GO:0008150_0.849|GO:0005575_0.755|GO:0110165_0.755|GO:0009987_0.721|GO:0003674_0.702|GO:0008152_0.547
|
IPR001818+122-286+|IPR002477+48-101+|IPR006026+119-287+|IPR021190+101-114_148-163_170-198_233-258_273-286+|IPR024079+34-289+|IPR033739+122-285+|IPR036365+45-110+
|
SM00235+119-287+
|
PF00413+122-286+Matrixin|PF01471+48-101+Putative_peptidoglycan_binding_domain
|
— |
PTHR10201+24-370+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
249-428
|
1.000
|
1-248
|
1slm_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.970
|
46192.050
|
9.419
|
11.000
|
24.533
|
12.850
|
48.832
|
51.168
|
14.252
|
10.280
|
56.308
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
2671.917
|
4221.141
|
6281.730
|
1965.621
|
3195.925
|
2376.849
|
460.885
|
9761.705
|
287.400
|
875.141
|
623.252
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.345
|
-1.240
|
-1.568
|
0.669
|
-0.412
|
-2.357
|
1.937
|
-4.264
|
— | — |
2.024
|
— | — |