SCN Proteipedia

Hg_chrom7_TN10mRNA_14498

Organism: Heterodera glycines Gene Locus: chr7:6936084-6940777 Feature type: polypeptide

Protein Sequence

Length: 848

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.193	0.795	0.901	0.61	1.258	1.844	0.842	1.474	0.891	1.498	0.607	0.832	0.786	0.635	1.997	0.943	0.696	0.822	0.454	0.451	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13685	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	12-ppJ2_pJ2_J3_Females	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRAR,RRRR,GRSGQKLKQR,RRMDEGWPTGKRKHF	—	—	—	—	—	—	0.000	—	—	0.657	0.303	0.041	0.276	0.053	0.031	0.039	0.025	0.017	0.052

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011561	1.000	1.000	Hsc_gene_12471.t1	Hsc_gene_12471.t1	—	Q21489.2 ATP-dependent DNA helicase chl-1 [Caenorhabditis elegans]	KAI1727880.1 DEAD2 domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003677\|GO:0003678\|GO:0004386\|GO:0005524\|GO:0006139\|GO:0016818	GO:0008150_0.955\|GO:0009987_0.916\|GO:0005575_0.719\|GO:0110165_0.719\|GO:0065007_0.663\|GO:0005622_0.652\|GO:0008152_0.647\|GO:0043170_0.647\|GO:0050789_0.646\|GO:0044238_0.639\|GO:0006139_0.614\|GO:0016020_0.612\|GO:0090304_0.606\|GO:0050794_0.605\|GO:0043226_0.601\|GO:0050896_0.591\|GO:0043229_0.580\|GO:0051716_0.569\|GO:0006950_0.514\|GO:0003674_0.501	IPR006554+35-342+\|IPR006555+629-817_646-804+\|IPR010614+124-319+\|IPR013020+487-821+\|IPR014013+16-349+\|IPR027417+115-360_603-821+\|IPR045028+104-838+	SM00488+35-342+\|SM00491+646-804+	PF06733+124-319+DEAD_2\|PF13307+629-817+Helicase_C-terminal_domain	—	PTHR11472+104-838+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-131;412-494	2.000	132-411;495-848	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.717	94583.010	8.723	23.500	29.245	7.901	50.708	49.292	16.745	12.500	47.052

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	—	steelblue	363.758	234.779	412.841	467.083	308.543	225.608	583.733	189.514	167.147	557.792	390.373

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.585	0.855	0.286	-0.630	-0.437	1.382	—	1.767	—	—	—	—	—

No JSON data available for plots.

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