Hg_chrom7_TN10mRNA_14499
Organism: Heterodera glycines Gene Locus: chr7:6941386-6943406 Feature type: polypeptideProtein Sequence
Length: 397
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.849 | 1.23 | 0.87 | 0.869 | 1.427 | 1.227 | 0.78 | 1.259 | 1.175 | 1.021 | 0.992 | 1.778 | 1.539 | 1.017 | 1.439 | 0.936 | 0.413 | 0.725 | 0.969 | 0.667 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13686
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.801
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— |
KGKAAEAKRE,KKLALPPLKANSDNKNKSR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.552
|
0.120
|
0.035
|
0.522
|
0.263
|
0.072
|
0.190
|
0.211
|
0.220
|
0.181
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011562
|
1.000
|
1.000
|
Hsc_gene_12470.t1
|
Hsc_gene_12470.t1
|
— |
P34254.1 Nicotinamide N-methyltransferase [Caenorhabditis elegans]
|
KAF8357734.1 anmt-1, partial [Pristionchus pacificus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008168
|
GO:0003674_0.690|GO:0005575_0.682|GO:0110165_0.681|GO:0005622_0.573|GO:0003824_0.567|GO:0008150_0.549|GO:0016740_0.513
|
IPR000940+80-335_81-334_82-337+|IPR029063+78-336_88-311+
|
— |
PF01234+81-334+NNMT/PNMT/TEMT_family
|
— |
PTHR10867+80-335+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-92;394-397
|
1.000
|
93-393
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.755
|
45259.530
|
7.606
|
6.000
|
29.471
|
11.587
|
48.615
|
51.385
|
16.121
|
13.350
|
45.592
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
366.752
|
857.375
|
494.576
|
332.711
|
187.997
|
359.714
|
253.805
|
666.856
|
397.191
|
124.260
|
241.231
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.024
|
-1.503
|
-0.462
|
-0.854
|
0.951
|
-0.492
|
0.781
|
-1.248
|
— | — | — | — | — |
No JSON data available for plots.