Hg_chrom7_TN10mRNA_14500
Organism: Heterodera glycines Gene Locus: chr7:6943022-6943968 Feature type: polypeptideProtein Sequence
Length: 118
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.887 | 0.197 | 0.616 | 0.877 | 1.977 | 1.521 | 0.908 | 0.424 | 0.942 | 1.145 | 0.77 | 1.496 | 0.942 | 1.467 | 2.075 | 0.847 | 0.972 | 0.385 | 1.304 | 0.499 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13687
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — |
21-47
|
0.988
|
— | — |
0.000
|
— | — |
0.705
|
0.204
|
0.062
|
0.399
|
0.049
|
0.075
|
0.043
|
0.006
|
0.029
|
0.120
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003081
|
2.000
|
1.000
|
Hsc_gene_12720.t1
|
— | — |
Q21489.2 ATP-dependent DNA helicase chl-1 [Caenorhabditis elegans]
|
KAH7731273.1 Protein CHL-1 [Aphelenchus avenae]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524
|
GO:0008150_0.908|GO:0009987_0.859|GO:0005575_0.721|GO:0110165_0.711|GO:0008152_0.630|GO:0065007_0.628|GO:0005622_0.627|GO:0043170_0.627|GO:0044238_0.616|GO:0050896_0.614|GO:0050789_0.613|GO:0006139_0.605|GO:0090304_0.595|GO:0050794_0.591|GO:0051716_0.585|GO:0043226_0.572|GO:0016020_0.557|GO:0043229_0.547|GO:0006950_0.542|GO:0033554_0.508|GO:0006259_0.506
|
IPR014013+25-118+|IPR027417+27-81_33-105+|IPR045028+29-85+
|
— | — | — |
PTHR11472+29-85+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-25
|
1.000
|
26-118
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.690
|
13407.220
|
6.933
|
0.500
|
31.356
|
7.627
|
50.000
|
50.000
|
16.102
|
15.254
|
44.068
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
brown
|
30.787
|
34.062
|
42.788
|
36.835
|
31.131
|
18.967
|
50.614
|
16.667
|
61.457
|
1.952
|
27.454
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
-0.700
|
1.428
|
— |
1.748
|
— | — | — | — | — |
No JSON data available for plots.