SCN Proteipedia

Hg_chrom7_TN10mRNA_14501

Organism: Heterodera glycines Gene Locus: chr7:6944447-6949073 Feature type: polypeptide

Protein Sequence

Length: 1,039

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.716	1.298	1.102	0.398	1.684	1.16	0.561	1.011	1.134	0.988	1.269	1.642	1.444	0.74	1.1	1.114	0.884	0.831	0.74	0.594	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13688	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_described	0.998

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RRKIVDIVDTDKRIKQ,RKRKGGKAVAPAAKRRR.,KKSSQASVQAWNYLRRKIV,RNRKRKGGKAVAPAAKRRR	—	—	—	—	—	—	0.000	—	—	0.893	0.072	0.029	0.240	0.065	0.031	0.024	0.002	0.068	0.080

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011563	1.000	1.000	Hsc_gene_12469.t1	Hsc_gene_12469.t1	—	Q9N5R9.1 FACT complex subunit spt-16 [Caenorhabditis elegans]	KAI1712806.1 FACT complex subunit (SPT16/CDC68) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0035101	GO:0008150_0.957\|GO:0005575_0.938\|GO:0110165_0.936\|GO:0005622_0.892\|GO:0016020_0.874\|GO:0009987_0.841\|GO:0043226_0.835\|GO:0043229_0.817\|GO:0065007_0.784\|GO:0043227_0.766\|GO:0050789_0.764\|GO:0043231_0.744\|GO:0050794_0.743\|GO:0005634_0.688\|GO:0032991_0.582\|GO:0008152_0.558\|GO:0043170_0.558\|GO:0044238_0.556\|GO:0009058_0.546\|GO:0044237_0.543\|GO:0044249_0.536\|GO:0009059_0.534\|GO:0006139_0.527\|GO:0048518_0.526\|GO:0010467_0.524\|GO:0071840_0.524\|GO:0003674_0.523\|GO:0043228_0.523\|GO:0043232_0.523\|GO:0019222_0.520\|GO:0048522_0.516\|GO:0016043_0.514\|GO:0090304_0.510\|GO:0031323_0.506\|GO:0034654_0.505\|GO:0060255_0.505\|GO:0031974_0.504\|GO:0031981_0.504\|GO:0043233_0.504\|GO:0070013_0.504\|GO:0141187_0.501	IPR000994+179-405+\|IPR011993+805-936+\|IPR013719+812-902_819-901+\|IPR013953+534-695+\|IPR029148+6-163_6-165+\|IPR029149+1-168+\|IPR036005+170-422_173-422+\|IPR040258+5-1027+\|IPR048969+942-1025+	SM01285+6-165+\|SM01286+534-695+\|SM01287+812-902+	PF00557+179-405+Metallopeptidase_family_M24\|PF08512+819-901+Histone_chaperone_Rttp106-like,_middle_domain\|PF08644+534-695+FACT_complex_subunit_(SPT16/CDC68)\|PF14826+6-163+FACT_complex_subunit_SPT16_N-terminal_lobe_domain\|PF21091+942-1025+FACT_complex_subunit_SPT16,_C-terminal_domain	G3DSA:2.30.29.150:FF:000003+649-804+FACT_complex_subunit_SPT16\|G3DSA:2.30.29.210:FF:000001+505-644+FACT_complex_subunit_spt16\|G3DSA:2.30.29.30:FF:000017+805-936+FACT_complex_subunit_SPT16\|G3DSA:3.90.230.10:FF:000005+170-429+FACT_complex_subunit_spt16	PTHR13980+5-1027+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	420-540;922-1039	2.000	1-419;541-921	8yjm_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.515	118714.710	5.479	-14.500	31.954	10.202	55.245	44.755	15.784	16.169	46.198

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	tan	2392.439	2647.301	2574.434	2585.891	3272.555	2686.539	3267.528	2023.505	3695.330	548.764	1897.292

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.269	-0.171	0.115	0.308	-0.270	0.293	-0.516	0.835	2.631	—	—	—	—

No JSON data available for plots.

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