Hg_chrom7_TN10mRNA_14502
Organism: Heterodera glycines Gene Locus: chr7:6949567-6951017 Feature type: polypeptideProtein Sequence
Length: 139
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.753 | 1.004 | 0.785 | 0.0 | 0.839 | 1.107 | 0.942 | 0.719 | 1.439 | 1.069 | 2.071 | 0.846 | 1.199 | 0.553 | 1.909 | 0.308 | 0.708 | 1.417 | 1.66 | 0.635 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13689
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RFKVFKAKQHRNRLVRVEMAKLKKISKPTAK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.566
|
0.053
|
0.007
|
0.584
|
0.268
|
0.066
|
0.133
|
0.000
|
0.027
|
0.026
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011564
|
1.000
|
1.000
|
Hsc_gene_12468.t1
|
Hsc_gene_12468.t1
|
— |
Q9CR57.3 Large ribosomal subunit protein eL14 [Mus musculus]
|
KAH7727561.1 60S ribosomal protein L14 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.915|GO:0110165_0.911|GO:0005622_0.812|GO:0043226_0.781|GO:0043229_0.781|GO:0005737_0.733|GO:0016020_0.607|GO:0005840_0.599|GO:0043228_0.599|GO:0043232_0.599|GO:0003674_0.575|GO:0043227_0.557|GO:0005829_0.545|GO:0032991_0.532|GO:0022626_0.531|GO:1990904_0.527|GO:0044391_0.508|GO:0043231_0.506
|
IPR002784+46-120+|IPR008991+5-95+|IPR014722+1-86+|IPR039660+1-134+|IPR041985+7-81+
|
— |
PF01929+46-120+Ribosomal_protein_L14
|
— |
PTHR11127+1-134+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
139-139
|
1.000
|
1-138
|
9cai_CM
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.911
|
16074.930
|
11.297
|
20.000
|
33.813
|
10.072
|
48.921
|
51.079
|
24.460
|
9.353
|
41.727
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
6480.042
|
3533.787
|
4491.274
|
8421.622
|
8568.935
|
6490.684
|
4184.694
|
2732.199
|
8943.179
|
7234.101
|
7966.563
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.117
|
1.116
|
1.016
|
— |
-0.385
|
-0.623
|
-1.356
|
0.759
|
— | — | — | — | — |
No JSON data available for plots.