Hg_chrom7_TN10mRNA_14504
Organism: Heterodera glycines Gene Locus: chr7:6958169-6961692 Feature type: polypeptideProtein Sequence
Length: 507
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.757 | 0.734 | 1.04 | 0.68 | 0.592 | 0.657 | 0.611 | 1.479 | 1.972 | 1.413 | 0.568 | 2.436 | 1.479 | 1.176 | 1.047 | 0.873 | 0.841 | 1.345 | 1.365 | 0.812 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13691
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
nucleus
|
RRSRIEFQIRLRRKTL
|
— | — | — | — |
1-24
|
0.922
|
1.000
|
4.000
|
4.000
|
0.063
|
0.054
|
0.009
|
0.180
|
0.248
|
0.123
|
0.216
|
0.015
|
0.807
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011565
|
1.000
|
1.000
|
Hsc_gene_12467.t1
|
Hsc_gene_12467.t1
|
— |
P48181.2 Acetylcholine receptor subunit beta-type unc-29 [Caenorhabditis elegans]
|
AIT71768.1 acetylocholine receptor beta subunit 29 [Anisakis simplex]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004888|GO:0005216|GO:0005230|GO:0006811|GO:0016020|GO:0022848|GO:0034220|GO:0045211
|
GO:0005575_0.952|GO:0110165_0.952|GO:0071944_0.941|GO:0005886_0.925|GO:0016020_0.925|GO:0008150_0.877|GO:0009987_0.852|GO:0006810_0.820|GO:0051179_0.820|GO:0051234_0.820|GO:0055085_0.818|GO:0006811_0.790|GO:0034220_0.788|GO:0065007_0.773|GO:0003674_0.768|GO:0005215_0.760|GO:0022857_0.760|GO:0050789_0.745|GO:0015075_0.734|GO:0007154_0.732|GO:0023052_0.724|GO:0030054_0.718|GO:0005216_0.714|GO:0007267_0.714|GO:0015267_0.714|GO:0022803_0.714|GO:0045202_0.714|GO:0098916_0.714|GO:0099536_0.714|GO:0099537_0.714|GO:0050896_0.713|GO:0006812_0.709|GO:0098655_0.709|GO:0007268_0.697|GO:0022836_0.681|GO:0060089_0.661|GO:0008324_0.658|GO:0038023_0.647|GO:0051716_0.644|GO:0032501_0.642|GO:0098590_0.640|GO:0050794_0.634|GO:0003008_0.630|GO:0065008_0.626|GO:0015276_0.615|GO:0022834_0.615|GO:0007165_0.614|GO:0005261_0.604|GO:0030594_0.596|GO:0042391_0.584|GO:0050877_0.579|GO:0022835_0.576|GO:0005230_0.570|GO:0022824_0.570|GO:0007166_0.569|GO:0097060_0.565|GO:0098794_0.541|GO:0099565_0.541|GO:0045211_0.539|GO:0060078_0.523|GO:0098960_0.504
|
IPR002394+62-78_96-110_114-126_132-150+|IPR006029+234-476+|IPR006201+26-478_37-387_75-91_108-119_152-166_221-233+|IPR006202+28-227+|IPR018000+152-166+|IPR036719+227-484+|IPR036734+21-232_26-226+|IPR038050+233-339_420-490+
|
— |
PF02931+28-227+Neurotransmitter-gated_ion-channel_ligand_binding_domain|PF02932+234-476+Neurotransmitter-gated_ion-channel_transmembrane_region
|
G3DSA:1.20.58.390:FF:000038+233-345+Acetylcholine_receptor_subunit_beta-like_1|G3DSA:2.70.170.10:FF:000013+20-232+Acetylcholine_receptor_subunit_alpha
|
PTHR18945+37-387+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-507
|
8zrp_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.610
|
57163.220
|
7.153
|
5.500
|
21.105
|
12.821
|
38.067
|
61.933
|
11.834
|
9.270
|
48.718
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
435.644
|
586.381
|
643.997
|
252.437
|
98.646
|
343.094
|
54.749
|
755.990
|
343.685
|
622.446
|
502.977
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.353
|
-1.242
|
-1.387
|
1.812
|
-2.635
|
1.037
|
-3.644
|
— | — | — | — | — |