SCN Proteipedia

Hg_chrom7_TN10mRNA_14507

Organism: Heterodera glycines Gene Locus: chr7:6970361-6976916 Feature type: polypeptide

Protein Sequence

Length: 820

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.234	1.872	0.732	0.252	0.996	2.033	0.973	1.585	0.65	0.857	0.554	1.506	1.05	1.149	0.796	1.551	0.98	0.517	0.469	0.395	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13694	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRKR,KRRK,RKRK	—	—	—	—	—	—	0.000	—	—	0.955	0.086	0.007	0.250	0.018	0.022	0.011	0.028	0.027	0.049

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004619	1.000	2.000	Hsc_gene_12465.t1;Hsc_gene_12465.t2	Hsc_gene_12465.t1;Hsc_gene_12465.t2	—	O02326.3 AT-rich interactive domain-containing protein cfi-1 [Caenorhabditis elegans]	KAK5978571.1 AT-rich interactive domain-containing protein cfi-1 [Trichostrongylus colubriformis]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677\|GO:0006357	GO:0005575_0.841\|GO:0110165_0.839\|GO:0008150_0.829\|GO:0005622_0.789\|GO:0009987_0.762\|GO:0016020_0.749\|GO:0043226_0.734\|GO:0043229_0.731\|GO:0065007_0.703\|GO:0050789_0.693\|GO:0043227_0.685\|GO:0043231_0.663\|GO:0050794_0.659\|GO:0003674_0.638\|GO:0005634_0.638\|GO:0005488_0.603\|GO:0008152_0.585\|GO:0043170_0.582\|GO:0019222_0.581\|GO:0031323_0.574\|GO:0044237_0.574\|GO:0044238_0.574\|GO:0080090_0.569\|GO:0009058_0.567\|GO:0009059_0.567\|GO:0044249_0.567\|GO:0060255_0.561\|GO:0006139_0.555\|GO:0009889_0.554\|GO:0010467_0.554\|GO:0031326_0.554\|GO:0010468_0.549\|GO:0010556_0.549\|GO:0034654_0.543\|GO:0016070_0.542\|GO:0032774_0.542\|GO:0090304_0.542\|GO:0141187_0.542\|GO:0019219_0.530\|GO:0051252_0.528\|GO:0006351_0.518\|GO:0006355_0.513\|GO:2001141_0.513	IPR001606+342-434_343-435_345-430+\|IPR023334+684-803+\|IPR036431+325-439_325-450+\|IPR045147+188-799+	SM00501+343-435+\|SM01014+339-430+	PF01388+345-430+ARID/BRIGHT_DNA_binding_domain	G3DSA:1.10.150.60:FF:000007+325-450+AT-rich_interactive_domain-containing_protein_3C	PTHR15348+188-799+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-333;442-820	1.000	334-441	2kk0_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.861	87918.180	6.043	-7.000	20.732	8.902	53.537	46.463	10.732	10.000	57.805

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	314.034	791.710	627.309	355.715	139.605	112.407	204.278	310.942	77.983	362.177	240.379

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.565	-1.292	-0.710	-1.382	—	0.873	1.368	-0.465	—	—	—	—	—

No JSON data available for plots.

Back to Browser