Hg_chrom7_TN10mRNA_14508
Organism: Heterodera glycines Gene Locus: chr7:6984736-6986646 Feature type: polypeptideProtein Sequence
Length: 320
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.163 | 0.654 | 0.739 | 0.323 | 1.094 | 0.881 | 0.893 | 1.719 | 0.694 | 1.225 | 1.136 | 1.838 | 1.215 | 0.841 | 1.276 | 0.982 | 0.82 | 1.184 | 0.962 | 0.735 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13695
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.953
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.798
|
0.153
|
0.022
|
0.351
|
0.016
|
0.043
|
0.040
|
0.005
|
0.042
|
0.137
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011567
|
1.000
|
1.000
|
Hsc_gene_12464.t1
|
Hsc_gene_12464.t1
|
— |
A8WU31.1 Serine/threonine-protein kinase VRK1 [Caenorhabditis briggsae]
|
KAF7637453.1 Protein kinase domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.850|GO:0005575_0.817|GO:0110165_0.810|GO:0003674_0.756|GO:0005622_0.739|GO:0009987_0.714|GO:0016020_0.696|GO:0043226_0.632|GO:0043229_0.629|GO:0043227_0.591|GO:0003824_0.571|GO:0043231_0.560|GO:0005737_0.554|GO:0065007_0.538|GO:0016740_0.525|GO:0140096_0.510|GO:0050789_0.501
|
IPR000719+31-297_31-320+|IPR008271+153-165+|IPR011009+29-244+|IPR017441+37-60+|IPR040976+148-226+|IPR050235+28-308+
|
SM00220+31-297+
|
PF17667+148-226+Fungal_protein_kinase
|
— |
PTHR11909+28-308+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-320
|
7tan_L
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.832
|
35530.860
|
9.928
|
15.500
|
27.812
|
11.562
|
45.938
|
54.062
|
17.188
|
10.625
|
49.375
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey60
|
422.549
|
413.716
|
504.885
|
662.728
|
825.852
|
475.753
|
620.413
|
334.233
|
312.218
|
175.395
|
234.033
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.542
|
0.500
|
0.286
|
-0.781
|
0.395
|
-0.613
|
1.035
|
— | — | — | — | — |
No JSON data available for plots.