SCN Proteipedia

Hg_chrom7_TN10mRNA_14513

Organism: Heterodera glycines Gene Locus: chr7:7030258-7033172 Feature type: polypeptide

Protein Sequence

Length: 239

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.73	0.876	1.065	0.433	1.395	1.717	0.747	1.046	1.302	0.679	1.838	1.477	1.162	0.805	0.769	1.136	0.617	0.761	1.287	0.984	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13699	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	18-Not_Clustered	0.754

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|extracellular	—	—	—	—	—	—	—	—	0.000	—	—	0.350	0.320	0.058	0.642	0.091	0.023	0.104	0.004	0.247	0.814

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004620	2.000	1.000	Hsc_gene_10424.t1	Hsc_gene_10424.t1	—	—	KAI1708919.1 immunoglobulin i-set domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0005575_0.925\|GO:0008150_0.921\|GO:0110165_0.917\|GO:0005622_0.900\|GO:0009987_0.868\|GO:0043226_0.860\|GO:0043229_0.853\|GO:0003674_0.850\|GO:0005737_0.816\|GO:0005488_0.810\|GO:0071840_0.752\|GO:0005515_0.751\|GO:0016043_0.745\|GO:0032502_0.736\|GO:0048856_0.734\|GO:0043228_0.719\|GO:0043232_0.719\|GO:0006996_0.708\|GO:0030154_0.708\|GO:0048869_0.708\|GO:0044085_0.702\|GO:0048468_0.701\|GO:0022607_0.692\|GO:0007010_0.686\|GO:0009653_0.685\|GO:0070925_0.681\|GO:0030029_0.678\|GO:0030036_0.677\|GO:0048646_0.677\|GO:0097435_0.677\|GO:0140694_0.677\|GO:0061061_0.675\|GO:0010927_0.670\|GO:0030239_0.670\|GO:0031032_0.670\|GO:0032989_0.670\|GO:0042692_0.670\|GO:0045214_0.670\|GO:0051146_0.670\|GO:0055001_0.670\|GO:0055002_0.670\|GO:0099080_0.585\|GO:0065007_0.574\|GO:0050789_0.563\|GO:0099081_0.563\|GO:0099512_0.563\|GO:0030016_0.540\|GO:0030017_0.540\|GO:0031672_0.540\|GO:0043292_0.540\|GO:0032501_0.512	IPR007110+142-237+\|IPR013098+142-237+\|IPR013783+37-136_137-239+\|IPR036179+39-236+\|IPR051129+125-228+	—	PF07679+142-237+Immunoglobulin_I-set_domain	G3DSA:2.60.40.10:FF:000107+141-239+Myosin,_light_chain_kinase_a	PTHR47633+125-228+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-1;237-239	1.000	2-236	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.789	27304.930	8.922	6.500	32.218	11.297	54.393	45.607	17.992	14.226	44.351

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	cyan	grey	1781.693	169.440	3970.182	1001.607	288.436	1904.187	37.388	12556.517	140.590	216.556	183.999

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	4.320	2.425	-1.878	-1.828	2.736	-5.659	2.620	-8.249	—	—	—	—	—

No JSON data available for plots.

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