Hg_chrom7_TN10mRNA_14520
Organism: Heterodera glycines Gene Locus: chr7:7068462-7081411 Feature type: polypeptideProtein Sequence
Length: 1,550
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.825 | 1.425 | 1.044 | 0.957 | 1.118 | 1.588 | 0.699 | 1.387 | 1.204 | 1.116 | 0.635 | 0.949 | 1.541 | 0.968 | 1.145 | 1.171 | 0.836 | 0.792 | 0.645 | 0.493 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13704
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.794
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
PIKKRRF
|
— | — | — | — | — | — |
0.000
|
— | — |
0.191
|
0.024
|
0.006
|
0.347
|
0.161
|
0.321
|
0.284
|
0.035
|
0.788
|
0.130
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004623
|
1.000
|
2.000
|
Hsc_gene_22383.t1;Hsc_gene_22383.t2
|
— | — | — |
KAH7722532.1 CRE-ITX-1 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.971|GO:0005575_0.932|GO:0110165_0.932|GO:0009987_0.930|GO:0065007_0.896|GO:0032501_0.831|GO:0051179_0.805|GO:0065008_0.730|GO:0003008_0.704|GO:0030054_0.654|GO:0050789_0.653|GO:0045202_0.603|GO:0007154_0.563|GO:0006810_0.558|GO:0051234_0.558|GO:0023052_0.554|GO:0071944_0.535|GO:0005886_0.519|GO:0016020_0.519
|
IPR000742+89-130_92-130_118-129_573-612_575-612_859-908+|IPR001791+365-572_390-549_475-548_477-547_620-827_620-855_641-829_649-829+|IPR013320+476-574_595-860_894-1052+|IPR050372+788-1240+
|
SM00181+92-130_575-612_859-908+|SM00282+390-549_641-829+
|
PF02210+475-548_649-829+Laminin_G_domain
|
— |
PTHR15036+788-1240+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
743-794;1048-1171;1411-1550
|
3.000
|
1-742;795-1047;1172-1410
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.625
|
173332.600
|
5.699
|
-19.500
|
25.032
|
10.839
|
50.645
|
49.355
|
12.581
|
12.452
|
51.161
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
grey
|
1102.085
|
323.539
|
783.702
|
521.273
|
580.305
|
1476.722
|
711.334
|
775.426
|
1212.577
|
1972.575
|
1646.862
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.048
|
0.551
|
-0.480
|
— |
1.363
|
-1.047
|
-1.036
|
— | — | — | — | — | — |
No JSON data available for plots.