SCN Proteipedia

Hg_chrom7_TN10mRNA_14521

Organism: Heterodera glycines Gene Locus: chr7:7087029-7099310 Feature type: polypeptide

Protein Sequence

Length: 1,417

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.919	1.805	0.911	0.973	0.941	1.665	0.554	1.729	0.706	0.963	0.652	1.827	0.667	1.072	1.224	1.573	0.983	0.727	1.086	0.394	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13705	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	0.993

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	KRRK,RRRR,RKPSIRRARSRRRLE	—	—	—	—	—	—	0.001	—	—	0.264	0.158	0.023	0.647	0.189	0.198	0.160	0.064	0.478	0.056

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004624	1.000	2.000	Hsc_gene_23561.t1;Hsc_gene_5159.t1	Hsc_gene_23561.t1;Hsc_gene_5159.t1	—	A8X775.1 Mitogen-activated protein kinase kinase kinase dlk-1 [Caenorhabditis briggsae]	KAH7718512.1 mitogen-activated protein kinase kinase kinase 12 [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0005524\|GO:0006468	GO:0008150_0.989\|GO:0009987_0.966\|GO:0065007_0.860\|GO:0050789_0.859\|GO:0003674_0.852\|GO:0003824_0.841\|GO:0140096_0.841\|GO:0005575_0.832\|GO:0110165_0.832\|GO:0050794_0.831\|GO:0004672_0.796\|GO:0016301_0.796\|GO:0016740_0.796\|GO:0016772_0.796\|GO:0016773_0.796\|GO:0005622_0.776\|GO:0050896_0.774\|GO:0051716_0.747\|GO:0007154_0.692\|GO:0008152_0.690\|GO:0043170_0.690\|GO:0023052_0.689\|GO:0007165_0.678\|GO:0004674_0.643\|GO:0044238_0.642\|GO:0044237_0.626\|GO:0005488_0.618\|GO:0019538_0.610\|GO:0036211_0.598\|GO:0043412_0.598\|GO:0005515_0.589\|GO:0048518_0.578\|GO:0048522_0.565\|GO:0006468_0.557\|GO:0006793_0.557\|GO:0006796_0.557\|GO:0016310_0.557\|GO:0048583_0.556\|GO:0035556_0.547	IPR000719+196-455_197-448+\|IPR001245+201-447_261-274_297-315_418-440+\|IPR008271+303-315+\|IPR011009+185-447+\|IPR050167+54-449+	SM00220+197-448+	PF07714+201-447+Protein_tyrosine_and_serine/threonine_kinase	—	PTHR23257+54-449+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-148;571-904;997-1097;1158-1417	3.000	149-570;905-996;1098-1157	9cdy_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.860	157237.990	7.248	19.500	24.418	8.610	55.681	44.319	13.761	10.656	55.540

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	tan	1401.854	4082.179	1968.893	1087.144	1131.963	1579.705	1134.043	1640.648	901.863	722.498	799.369

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.281	-2.046	-0.749	—	0.496	-0.469	—	-0.393	—	—	—	—	—

No JSON data available for plots.

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