Hg_chrom7_TN10mRNA_14523
Organism: Heterodera glycines Gene Locus: chr7:7103206-7106664 Feature type: polypeptideProtein Sequence
Length: 627
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.094 | 1.595 | 0.928 | 0.165 | 2.499 | 0.613 | 0.74 | 0.558 | 0.886 | 0.948 | 1.764 | 2.627 | 0.443 | 0.705 | 0.716 | 0.638 | 0.811 | 0.87 | 1.35 | 0.188 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13707
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
extracellular
|
nucleus
|
EKEGDKAEKARNKAEKE,KKDPGGEVRMEFTRRKDE,RRKDENGNEEVMVTFVKKK,RKDENGNEEVMVTFVKKKE,KKKEGNDEPAKREEKEKEK,RRKMLKESLYNILLGRHKR,RKMLKESLYNILLGRHKRE
|
— | — | — | — |
1-19
|
0.915
|
0.679
|
0.000
|
0.000
|
0.419
|
0.301
|
0.027
|
0.365
|
0.204
|
0.065
|
0.149
|
0.020
|
0.174
|
0.650
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004625
|
2.000
|
1.000
|
Hsc_gene_23559.t1
|
— | — | — |
AJR19771.1 esophageal gland-localized secretory protein 3 [Heterodera glycines]
|
WP_216768689
|
0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
107-543
|
2.000
|
1-106;544-627
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.686
|
70176.160
|
4.682
|
-27.500
|
36.364
|
5.104
|
55.024
|
44.976
|
16.268
|
20.096
|
46.890
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
28148.690
|
51.197
|
11597.163
|
6107.560
|
738.145
|
2.239
|
4.878
|
219.768
|
153828.448
|
758.828
|
66360.094
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
7.595
|
6.760
|
-0.818
|
-3.081
|
-8.342
|
— | — | — |
7.548
|
-4.489
|
— | — | — |