SCN Proteipedia

Hg_chrom7_TN10mRNA_14526

Organism: Heterodera glycines Gene Locus: chr7:7116761-7123429 Feature type: polypeptide

Protein Sequence

Length: 487

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.003	0.812	0.859	0.637	1.027	1.79	0.709	1.027	1.506	1.11	0.964	1.087	1.141	0.869	1.592	0.763	0.909	0.84	1.58	0.604	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13709	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	18-ppJ2_pJ2_J3_J4_Male	0.983

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	RRKSR,RRRKKQQRRVRPARLQK,RKNRFYDILPFEFNRVRLR	34-58	0.978	—	—	—	—	0.000	—	—	0.118	0.046	0.009	0.299	0.214	0.477	0.212	0.072	0.905	0.153

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004626	2.000	1.000	Hsc_gene_23557.t2	Hsc_gene_23557.t2	—	Q9Y2R2.2 Tyrosine-protein phosphatase non-receptor type 22 [Homo sapiens]	KAI1711729.1 protein-tyrosine phosphatase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004725\|GO:0006470\|GO:0016311	GO:0008150_0.860\|GO:0005575_0.830\|GO:0110165_0.826\|GO:0009987_0.778\|GO:0003674_0.769\|GO:0016020_0.725\|GO:0065007_0.698\|GO:0071944_0.659\|GO:0050789_0.640\|GO:0003824_0.639\|GO:0005886_0.639\|GO:0050794_0.629\|GO:0050896_0.619\|GO:0016787_0.603\|GO:0140096_0.595\|GO:0016788_0.582\|GO:0004721_0.571\|GO:0004725_0.571\|GO:0016791_0.571\|GO:0042578_0.571\|GO:0051716_0.540\|GO:0005622_0.537\|GO:0032501_0.536\|GO:0005488_0.515\|GO:0023052_0.513\|GO:0007154_0.509\|GO:0032502_0.508	IPR000242+207-480_208-478_235-476_268-275_295-315_377-394_414-432_445-460_461-471+\|IPR000387+400-469+\|IPR003595+378-477+\|IPR016130+417-427+\|IPR029021+162-485_187-482+\|IPR050348+147-483+	SM00194+207-480+\|SM00404+378-477+	PF00102+235-476+Protein-tyrosine_phosphatase	—	PTHR19134+147-483+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	85-203	2.000	1-84;204-487	2c7s_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.765	55368.540	9.817	21.000	27.105	10.267	48.460	51.540	16.222	10.883	45.585

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	cyan	grey	215.450	76.290	326.909	177.183	95.356	377.279	152.096	386.358	153.277	230.833	197.595

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.872	1.078	-0.777	-0.926	2.000	-1.301	—	-1.202	—	—	—	—	—

No JSON data available for plots.

Back to Browser