Hg_chrom7_TN10mRNA_14532
Organism: Heterodera glycines Gene Locus: chr7:7145983-7146807 Feature type: polypeptideProtein Sequence
Length: 91
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.15 | 0.511 | 0.599 | 0.0 | 0.916 | 1.972 | 0.262 | 1.099 | 2.442 | 1.485 | 1.665 | 1.293 | 0.611 | 0.423 | 1.57 | 0.157 | 1.261 | 0.666 | 1.691 | 1.293 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13715
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
GKSRRKK,RRKKTLKFYTNYKKLEK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.409
|
0.197
|
0.052
|
0.459
|
0.284
|
0.201
|
0.197
|
0.027
|
0.139
|
0.191
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004626
|
2.000
|
1.000
|
Hsc_gene_23557.t2
|
Hsc_gene_23557.t1;Hsc_gene_23557.t2
|
— | — |
KAH7727652.1 Protein-tyrosine phosphatase [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004725|GO:0006470
|
GO:0005575_0.852|GO:0110165_0.843|GO:0008150_0.748|GO:0003674_0.734|GO:0016020_0.700|GO:0009987_0.653|GO:0065007_0.601|GO:0003824_0.565|GO:0016787_0.559|GO:0016788_0.556|GO:0004721_0.551|GO:0004725_0.551|GO:0016791_0.551|GO:0042578_0.551|GO:0140096_0.551|GO:0050789_0.534|GO:0071944_0.523|GO:0005886_0.521|GO:0050794_0.517
|
IPR000242+19-61+|IPR029021+13-85_16-65+
|
— |
PF00102+19-61+Protein-tyrosine_phosphatase
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-91
|
1yfo_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.943
|
10767.760
|
10.736
|
10.000
|
29.670
|
10.989
|
48.352
|
51.648
|
20.879
|
8.791
|
32.967
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
3.445
|
0.226
|
1.345
|
0.997
|
0.660
|
0.490
|
2.342
|
1.084
|
0.000
|
12.394
|
7.082
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.