Hg_chrom7_TN10mRNA_14534
Organism: Heterodera glycines Gene Locus: chr7:7156534-7159705 Feature type: polypeptideProtein Sequence
Length: 417
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.641 | 1.115 | 0.698 | 1.323 | 2.518 | 0.492 | 0.856 | 2.038 | 0.959 | 1.102 | 1.381 | 1.129 | 1.799 | 0.415 | 1.37 | 0.822 | 0.668 | 0.509 | 0.738 | 0.212 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13717
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
RRFAEKGNLIKHRRT
|
32-61
|
0.995
|
— | — | — | — |
0.000
|
— | — |
0.462
|
0.103
|
0.016
|
0.182
|
0.727
|
0.173
|
0.312
|
0.089
|
0.176
|
0.075
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000439
|
1.000
|
7.000
|
Hsc_gene_15084.t1;Hsc_gene_15084.t2;Hsc_gene_2088.t1;Hsc_gene_23074.t1;Hsc_gene_23572.t1;Hsc_gene_23573.t1;Hsc_gene_8995.t1
|
— | — | — | — |
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR013087+267-289_267-294_269-289_295-317_295-322_297-317_333-355_333-360_335-355_361-383_361-388_363-383_389-409_389-417+|IPR036236+276-326_333-364_355-407+|IPR050758+262-408+
|
SM00355+267-289_295-317_333-355_361-383_389-409+
|
PF00096+295-317_333-355_363-383_389-409+Zinc_finger,_C2H2_type
|
G3DSA:3.30.160.60:FF:000100+356-383+Zinc_finger_45-like|G3DSA:3.30.160.60:FF:000145+265-290+Zinc_finger_protein_574|G3DSA:3.30.160.60:FF:001049+384-410+zinc_finger_protein_319|G3DSA:3.30.160.60:FF:001157+291-319+Zinc_finger_protein_793
|
PTHR23234+262-408+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
147-262
|
2.000
|
1-146;263-417
|
5v3g_G
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.609
|
48085.230
|
6.078
|
-4.500
|
38.849
|
12.230
|
55.396
|
44.604
|
19.904
|
18.945
|
40.528
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
63.867
|
9.727
|
25.109
|
12.610
|
13.707
|
13.803
|
107.514
|
25.503
|
0.514
|
201.042
|
115.102
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.137
|
— |
-0.886
|
— | — |
2.973
|
0.783
|
2.218
|
-7.966
|
4.029
|
— | — | — |
No JSON data available for plots.