Hg_chrom7_TN10mRNA_14535
Organism: Heterodera glycines Gene Locus: chr7:7178533-7180218 Feature type: polypeptideProtein Sequence
Length: 443
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.866 | 0.945 | 0.821 | 0.545 | 0.941 | 1.1 | 0.941 | 1.919 | 1.555 | 1.434 | 0.855 | 1.593 | 1.63 | 0.608 | 1.382 | 0.871 | 1.036 | 0.513 | 1.563 | 0.332 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13718
|
— | — |
1.778
|
1.000
|
3.000
|
1.000
|
1.000
|
1.000
|
5.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKL
|
40-63
|
0.917
|
— | — | — | — |
0.000
|
— | — |
0.778
|
0.107
|
0.065
|
0.446
|
0.191
|
0.060
|
0.083
|
0.055
|
0.186
|
0.170
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002434
|
1.000
|
3.000
|
Hsc_gene_11835.t1;Hsc_gene_2677.t1;Hsc_gene_5384.t1
|
Hsc_gene_15310.t1;Hsc_gene_18725.t2;Hsc_gene_22082.t1;Hsc_gene_23065.t1;Hsc_gene_5153.t1;Hsc_gene_5153.t2
|
— | — |
KAI3421326.1 hypothetical protein GPALN_014945 [Globodera pallida]
|
WP_110112432
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR009689+23-152+
|
— |
PF06918+23-152+Protein_of_unknown_function_(DUF1280)
|
— |
PTHR31424+1-258+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-443
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.794
|
50069.600
|
9.571
|
18.500
|
26.411
|
12.867
|
47.178
|
52.822
|
16.253
|
10.158
|
44.470
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
blue
|
169.738
|
7.588
|
9.559
|
13.181
|
20.712
|
24.458
|
28.819
|
30.607
|
23.078
|
674.697
|
395.432
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
-5.036
|
— |
-4.727
|
— | — |
No JSON data available for plots.