Hg_chrom7_TN10mRNA_14536
Organism: Heterodera glycines Gene Locus: chr7:7184631-7189730 Feature type: polypeptideProtein Sequence
Length: 555
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.649 | 0.838 | 0.95 | 1.305 | 2.252 | 0.97 | 0.879 | 1.802 | 0.921 | 1.193 | 1.447 | 0.954 | 1.602 | 0.381 | 1.361 | 0.927 | 0.709 | 0.246 | 0.832 | 0.424 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13719
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— |
RRHLNNKTKCGKKMIK
|
40-75
|
0.950
|
— | — | — | — |
0.000
|
— | — |
0.411
|
0.042
|
0.009
|
0.209
|
0.517
|
0.222
|
0.178
|
0.072
|
0.408
|
0.061
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000438
|
7.000
|
1.000
|
Hsc_gene_22379.t1
|
— | — | — |
XP_026052747.1 gastrula zinc finger protein XlCGF57.1-like [Carassius auratus]
|
No
|
-0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.957|GO:0003674_0.890|GO:0005488_0.883|GO:0005575_0.859|GO:0110165_0.859|GO:0032501_0.841|GO:0009987_0.837|GO:0065007_0.831|GO:0050789_0.824|GO:0005622_0.805|GO:0050794_0.792|GO:0097159_0.778|GO:0016020_0.768|GO:0043226_0.745|GO:0003676_0.730|GO:0032502_0.728|GO:0048856_0.728|GO:0043229_0.718|GO:0008152_0.716|GO:0019222_0.716|GO:0009058_0.712|GO:0044237_0.710|GO:0044249_0.710|GO:0009059_0.708|GO:0043170_0.708|GO:0031323_0.696|GO:0010467_0.694|GO:0044238_0.694|GO:0043227_0.690|GO:0003677_0.687|GO:0007275_0.682|GO:0060255_0.680|GO:0080090_0.680|GO:0043565_0.678|GO:0003690_0.677|GO:0009889_0.673|GO:0031326_0.672|GO:1990837_0.672|GO:0006139_0.668|GO:0034654_0.664|GO:0010556_0.658|GO:0090304_0.656|GO:0010468_0.652|GO:0016070_0.650|GO:0141187_0.648|GO:0032774_0.646|GO:0043231_0.645|GO:0019219_0.626|GO:0006351_0.623|GO:0006355_0.623|GO:0051252_0.623|GO:2001141_0.623|GO:0048519_0.618|GO:0048523_0.593|GO:0001067_0.572|GO:0000976_0.570|GO:0048518_0.570|GO:0048731_0.570|GO:0071840_0.565|GO:0048522_0.564|GO:0016043_0.561|GO:0009893_0.527|GO:0005634_0.526|GO:0010604_0.517|GO:0031325_0.513|GO:0009891_0.512|GO:0006366_0.511|GO:0006357_0.510|GO:0010557_0.510|GO:0031328_0.510
|
IPR013087+279-301_279-306_281-301_307-329_307-334_309-329_339-361_339-366_341-361_383-405_383-410_385-405_411-433_411-438_413-433_439-461_439-466_441-461_467-489_467-494_469-489_495-517_495-522_497-517_523-543_523-552+|IPR036236+279-329_316-368_391-448_447-504_489-541+
|
SM00355+279-301_307-329_339-361_383-405_411-433_439-461_467-489_495-517_523-543+
|
PF00096+279-301_309-329_339-361_383-405_413-433_441-461_467-489_495-517_523-543+Zinc_finger,_C2H2_type
|
G3DSA:3.30.160.60:FF:000690+331-361+Zinc_finger_protein_354C|G3DSA:3.30.160.60:FF:000912+493-517+Zinc_finger_protein_660|G3DSA:3.30.160.60:FF:001049+518-544+zinc_finger_protein_319|G3DSA:3.30.160.60:FF:001450+278-301_382-405+zinc_finger_protein_774|G3DSA:3.30.160.60:FF:002343+302-330_406-433_434-464+Zinc_finger_protein_33A|G3DSA:3.30.160.60:FF:002716+465-492+Zinc_finger_protein_212
|
PTHR23235+441-505+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
146-274
|
2.000
|
1-145;275-555
|
5v3m_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.583
|
64017.900
|
6.192
|
-4.000
|
38.559
|
11.892
|
56.757
|
43.243
|
19.820
|
18.739
|
40.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
blue
|
87.900
|
5.304
|
6.820
|
6.478
|
5.160
|
11.288
|
73.014
|
46.194
|
6.220
|
322.049
|
186.694
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
2.704
|
1.927
|
0.804
|
-5.849
|
— |
-5.734
|
— | — |
No JSON data available for plots.