SCN Proteipedia

Hg_chrom7_TN10mRNA_14537

Organism: Heterodera glycines Gene Locus: chr7:7184631-7191980 Feature type: polypeptide

Protein Sequence

Length: 675

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.792	0.62	0.997	1.073	2.074	1.178	0.794	1.63	1.152	1.181	1.167	0.784	1.523	0.456	1.391	0.931	0.753	0.404	1.14	0.61	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13719	—	—	1.222	2.000	1.000	1.000	1.000	1.000	1.000	2.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	16-Females_and_Males	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	endoplasmic_reticulum	—	RRKSR	40-75	0.950	—	—	—	—	0.000	—	—	0.343	0.052	0.009	0.271	0.586	0.250	0.203	0.077	0.537	0.051

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000438	7.000	1.000	Hsc_gene_22379.t1	Hsc_gene_23557.t1;Hsc_gene_23557.t2	—	P16621.2 Tyrosine-protein phosphatase Lar [Drosophila melanogaster]	KAH7727652.1 Protein-tyrosine phosphatase [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004725\|GO:0006470\|GO:0016311	GO:0008150_0.870\|GO:0005575_0.850\|GO:0110165_0.850\|GO:0016020_0.818\|GO:0003674_0.809\|GO:0009987_0.794\|GO:0065007_0.724\|GO:0050789_0.680\|GO:0050794_0.648\|GO:0005886_0.637\|GO:0071944_0.637\|GO:0005488_0.611\|GO:0032501_0.577\|GO:0003824_0.561\|GO:0016787_0.561\|GO:0140096_0.561\|GO:0016788_0.550\|GO:0043226_0.548\|GO:0004721_0.546\|GO:0004725_0.546\|GO:0016791_0.546\|GO:0042578_0.546\|GO:0050896_0.541\|GO:0005622_0.506\|GO:0032502_0.501\|GO:0048856_0.501	IPR000242+95-668_503-666_524-664_565-582_602-620_633-648_649-659+\|IPR000387+588-657+\|IPR003595+566-665+\|IPR013087+279-301_279-306_281-301_307-329_307-334_309-329_339-361_339-366_341-361_383-405_383-410_385-405_411-433_411-438_413-433_439-461_439-466_441-461_467-489_467-494_469-489_495-517_495-522_497-517+\|IPR016130+605-615+\|IPR029021+519-673_524-670+\|IPR036236+287-335_324-364_383-433_420-476_465-517+\|IPR050331+339-469+	SM00194+95-668+\|SM00355+279-301_307-329_339-361_383-405_411-433_439-461_467-489_495-517+\|SM00404+566-665+	PF00096+279-301_309-329_339-361_383-405_413-433_441-461_467-489_495-517+Zinc_finger,_C2H2_type\|PF00102+524-664+Protein-tyrosine_phosphatase	G3DSA:3.30.160.60:FF:000690+331-361_434-461+Zinc_finger_protein_354C\|G3DSA:3.30.160.60:FF:000912+407-433_492-519+Zinc_finger_protein_660\|G3DSA:3.30.160.60:FF:001450+278-301_382-406+zinc_finger_protein_774\|G3DSA:3.30.160.60:FF:002343+302-330+Zinc_finger_protein_33A\|G3DSA:3.30.160.60:FF:002716+464-491+Zinc_finger_protein_212	PTHR16515+339-469+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	146-274	2.000	1-145;275-675	5v3j_F	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.687	77731.370	5.585	-12.000	35.704	12.296	54.074	45.926	17.778	17.926	40.889

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkred	blue	87.900	5.304	6.820	6.478	5.160	11.288	73.014	46.194	6.220	322.049	186.694

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	—	—	—	—	2.704	1.927	0.804	-5.849	—	-5.734	—	—

No JSON data available for plots.

Back to Browser