Hg_chrom7_TN10mRNA_14541
Organism: Heterodera glycines Gene Locus: chr7:7213625-7215354 Feature type: polypeptideProtein Sequence
Length: 110
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.48 | 1.057 | 0.826 | 0.627 | 1.364 | 0.932 | 0.758 | 0.909 | 0.606 | 0.614 | 1.102 | 2.139 | 1.515 | 0.699 | 0.742 | 0.39 | 1.341 | 1.102 | 2.098 | 1.337 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13723
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
KRKGWNTVILPDKYRRA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.669
|
0.607
|
0.247
|
0.672
|
0.271
|
0.072
|
0.064
|
0.020
|
0.060
|
0.111
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004628
|
2.000
|
1.000
|
Hsc_gene_23553.t1
|
— | — | — |
XP_049882800.1 protein adenylyltransferase Fic [Pectinophora gossypiella]
|
No
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.913|GO:0005575_0.884|GO:0110165_0.869|GO:0003674_0.833|GO:0050896_0.777|GO:0016020_0.736|GO:0006950_0.719|GO:0003824_0.702|GO:0071944_0.664|GO:0016740_0.660|GO:0016772_0.650|GO:0016779_0.650|GO:0070566_0.650|GO:0070733_0.650|GO:0005886_0.633|GO:0009987_0.621|GO:0005622_0.582|GO:0005737_0.577|GO:0005488_0.562|GO:0008152_0.549|GO:0005515_0.530|GO:0043226_0.530|GO:0044238_0.522|GO:0051716_0.517|GO:0043229_0.513|GO:0043170_0.510
|
IPR003812+1-110_8-69+|IPR036597+1-109_7-105+|IPR040198+4-70+
|
— |
PF02661+8-69+Fic/DOC_family
|
— |
PTHR13504+4-70+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3
|
1.000
|
4-110
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.614
|
12404.040
|
5.711
|
-1.000
|
25.455
|
14.545
|
44.545
|
55.455
|
12.727
|
12.727
|
51.818
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
84.094
|
45.699
|
15.837
|
10.141
|
10.524
|
13.301
|
38.319
|
67.561
|
33.171
|
267.514
|
167.082
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.755
|
-2.310
|
— | — | — |
1.537
|
2.256
|
— | — | — |
-4.291
|
— | — |
No JSON data available for plots.