SCN Proteipedia

Hg_chrom7_TN10mRNA_14544

Organism: Heterodera glycines Gene Locus: chr7:7253848-7255788 Feature type: polypeptide

Protein Sequence

Length: 384

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.727	1.09	0.616	0.539	3.602	0.735	0.961	1.172	0.984	1.372	1.144	1.379	1.23	0.401	1.116	0.484	0.683	0.513	1.002	0.153	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13726	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	2.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide	endoplasmic_reticulum	—	KKGTILQQPAAKSKKATK	25-45	0.994	—	—	—	—	0.000	—	—	0.446	0.062	0.016	0.239	0.610	0.231	0.469	0.056	0.261	0.113

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001405	1.000	4.000	Hsc_gene_22376.t1;Hsc_gene_22378.t1;Hsc_gene_23567.t1;Hsc_gene_23575.t1	Hsc_gene_22379.t1	—	P22227.1 Zinc finger protein 42 [Mus musculus]	XP_048052887.1 gastrula zinc finger protein XlCGF7.1-like [Megalobrama amblycephala]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.961\|GO:0005575_0.889\|GO:0110165_0.889\|GO:0003674_0.877\|GO:0009987_0.861\|GO:0005488_0.860\|GO:0065007_0.828\|GO:0005622_0.823\|GO:0016020_0.811\|GO:0050789_0.806\|GO:0050794_0.764\|GO:0043226_0.760\|GO:0043229_0.732\|GO:0097159_0.707\|GO:0043227_0.693\|GO:0032501_0.688\|GO:0003676_0.678\|GO:0008152_0.675\|GO:0009058_0.675\|GO:0044237_0.675\|GO:0044249_0.675\|GO:0009059_0.674\|GO:0043170_0.674\|GO:0044238_0.666\|GO:0019222_0.665\|GO:0003677_0.659\|GO:0010467_0.659\|GO:0043231_0.657\|GO:0043565_0.657\|GO:0003690_0.656\|GO:0031323_0.656\|GO:1990837_0.655\|GO:0060255_0.649\|GO:0080090_0.647\|GO:0006139_0.642\|GO:0009889_0.640\|GO:0031326_0.640\|GO:0034654_0.637\|GO:0090304_0.636\|GO:0010556_0.633\|GO:0141187_0.630\|GO:0010468_0.628\|GO:0016070_0.626\|GO:0032774_0.623\|GO:0006351_0.612\|GO:0019219_0.612\|GO:0006355_0.610\|GO:0051252_0.610\|GO:2001141_0.610\|GO:0048518_0.591\|GO:0048522_0.587\|GO:0001067_0.582\|GO:0000976_0.581\|GO:0032502_0.571\|GO:0048856_0.568\|GO:0009893_0.550\|GO:0048519_0.545\|GO:0010604_0.543\|GO:0031325_0.541\|GO:0007275_0.539\|GO:0009891_0.538\|GO:0010557_0.537\|GO:0031328_0.537\|GO:0006366_0.530\|GO:0006357_0.529\|GO:0048523_0.525\|GO:0140110_0.511\|GO:0003700_0.505	IPR013087+322-344_322-349_324-344_350-372_350-377_352-372+\|IPR036236+322-372+	SM00355+322-344_350-372+	PF00096+322-344_352-372+Zinc_finger,_C2H2_type	G3DSA:3.30.160.60:FF:000130+347-373+Spalt-like_transcription_factor_4\|G3DSA:3.30.160.60:FF:001450+321-346+zinc_finger_protein_774	PTHR23235+286-377+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	149-326;368-384	2.000	1-148;327-367	1ubd_C	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.978	44111.080	4.279	-41.500	40.365	8.594	55.469	44.531	15.365	25.000	36.979

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	magenta	25.994	9.822	14.740	8.454	6.106	9.505	125.792	6.093	2.587	44.090	26.303

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	—	—	—	—	3.733	—	4.514	—	—	—	—	—

No JSON data available for plots.

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