SCN Proteipedia

Hg_chrom7_TN10mRNA_14546

Organism: Heterodera glycines Gene Locus: chr7:7260438-7262847 Feature type: polypeptide

Protein Sequence

Length: 197

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.59	0.59	1.015	1.225	1.777	1.171	1.148	3.046	0.677	0.892	1.231	0.896	1.41	0.586	1.761	0.798	1.082	0.385	0.39	0.299	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13728	—	—	1.222	1.000	1.000	1.000	1.000	1.000	1.000	3.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	—	—

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKGTILQQPAAKSKKATK	58-78	0.955	—	—	—	—	0.000	—	—	0.927	0.076	0.048	0.289	0.030	0.010	0.017	0.008	0.084	0.125

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000438	7.000	1.000	Hsc_gene_22379.t1	Hsc_gene_23566.t1	—	P22227.1 Zinc finger protein 42 [Mus musculus]	XP_026052747.1 gastrula zinc finger protein XlCGF57.1-like [Carassius auratus]	No	-0.010

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.935\|GO:0009987_0.866\|GO:0065007_0.838\|GO:0050789_0.836\|GO:0003674_0.825\|GO:0050794_0.817\|GO:0005488_0.798\|GO:0008152_0.782\|GO:0009058_0.782\|GO:0009059_0.782\|GO:0043170_0.782\|GO:0044237_0.782\|GO:0044249_0.782\|GO:0010467_0.781\|GO:0019222_0.770\|GO:0031323_0.770\|GO:0097159_0.766\|GO:0044238_0.762\|GO:0080090_0.756\|GO:0003676_0.755\|GO:0006139_0.749\|GO:0060255_0.749\|GO:0034654_0.744\|GO:0009889_0.743\|GO:0031326_0.743\|GO:0016070_0.739\|GO:0090304_0.739\|GO:0032774_0.738\|GO:0141187_0.738\|GO:0005575_0.737\|GO:0110165_0.737\|GO:0010556_0.732\|GO:0010468_0.731\|GO:0019219_0.709\|GO:0051252_0.709\|GO:0005622_0.705\|GO:2001141_0.705\|GO:0006351_0.704\|GO:0006355_0.704\|GO:0043226_0.704\|GO:0043229_0.704\|GO:0003677_0.682\|GO:0043565_0.679\|GO:0003690_0.673\|GO:1990837_0.671\|GO:0016020_0.663\|GO:0043227_0.645\|GO:0043231_0.643\|GO:0000976_0.606\|GO:0001067_0.606\|GO:0032501_0.598\|GO:0006357_0.593\|GO:0006366_0.593\|GO:0048519_0.593\|GO:0005634_0.592\|GO:0032502_0.578\|GO:0048523_0.572\|GO:0140110_0.566\|GO:0048856_0.563\|GO:0048518_0.557\|GO:0003700_0.549\|GO:0048522_0.539\|GO:0007275_0.510	IPR013087+55-77_55-82_57-77_85-104_105-127_105-132_107-127_133-155_133-160_135-155+\|IPR036236+55-99_85-142+	SM00355+55-77_105-127_133-155+	PF00096+55-77_105-127_135-155+Zinc_finger,_C2H2_type	G3DSA:3.30.160.60:FF:000557+130-157+zinc_finger_and_SCAN_domain-containing_protein_29\|G3DSA:3.30.160.60:FF:001450+54-80+zinc_finger_protein_774\|G3DSA:3.30.160.60:FF:002343+86-129+Zinc_finger_protein_33A	PTHR24409+55-157+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-45	1.000	46-197	2i13_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.682	22466.050	7.731	7.000	39.086	12.690	58.376	41.624	22.843	16.244	44.162

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	—	grey	18.074	4.272	4.132	2.884	2.297	1.986	13.376	3.318	0.514	66.590	38.272

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	—	—	—	—	2.752	—	2.156	-6.370	—	—	—	—

No JSON data available for plots.

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