Hg_chrom7_TN10mRNA_14557
Organism: Heterodera glycines Gene Locus: chr7:7307780-7310620 Feature type: polypeptideProtein Sequence
Length: 399
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.078 | 0.758 | 0.684 | 0.605 | 0.794 | 1.028 | 0.835 | 1.378 | 1.17 | 1.795 | 0.646 | 1.327 | 1.044 | 1.157 | 1.637 | 1.182 | 1.068 | 0.722 | 0.0 | 0.295 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13737
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
6-40
|
0.996
|
34-74
|
0.996
|
— | — |
0.000
|
— | — |
0.153
|
0.771
|
0.284
|
0.262
|
0.074
|
0.061
|
0.138
|
0.050
|
0.079
|
0.058
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004630
|
2.000
|
1.000
|
Hsc_gene_2086.t1
|
Hsc_gene_2086.t1;Hsc_gene_23577.t1
|
— |
Q13825.1 Methylglutaconyl-CoA hydratase, mitochondrial [Homo sapiens]
|
KAI6207276.1 putative 3-hydroxybutyryl-CoA dehydratase [Aphelenchoides fujianensis]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824
|
GO:0005575_0.780|GO:0008150_0.721|GO:0110165_0.715|GO:0003674_0.702|GO:0016020_0.652|GO:0009987_0.645|GO:0005622_0.606|GO:0008152_0.570|GO:0003824_0.560|GO:0043226_0.557|GO:0044237_0.545|GO:0043229_0.540|GO:0005737_0.528|GO:0043227_0.506
|
IPR001753+153-398+|IPR014748+341-399+|IPR018376+242-262+|IPR029045+152-398+
|
— |
PF00378+153-398+Enoyl-CoA_hydratase/isomerase
|
G3DSA:1.10.12.10:FF:000001+340-399+Probable_enoyl-CoA_hydratase,_mitochondrial|G3DSA:3.90.226.10:FF:000009+146-339+Carnitinyl-CoA_dehydratase
|
PTHR11941+143-398+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-399
|
2zqr_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.871
|
43497.350
|
10.337
|
20.500
|
23.559
|
7.519
|
45.614
|
54.386
|
15.038
|
8.521
|
50.627
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
1396.191
|
673.367
|
750.235
|
1435.388
|
2875.400
|
2121.378
|
1234.313
|
861.679
|
711.416
|
1842.862
|
1357.957
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.955
|
1.044
|
0.970
|
-0.424
|
-0.772
|
-1.404
|
0.659
|
— | — | — | — | — |
No JSON data available for plots.