Hg_chrom7_TN10mRNA_14558
Organism: Heterodera glycines Gene Locus: chr7:7310615-7311795 Feature type: polypeptideProtein Sequence
Length: 218
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.013 | 0.64 | 1.251 | 0.791 | 1.3 | 1.411 | 0.819 | 1.376 | 0.51 | 1.488 | 0.487 | 2.698 | 1.147 | 1.235 | 1.311 | 0.917 | 0.526 | 0.973 | 0.706 | 0.405 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13738
|
— | — |
1.778
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.942
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus|mitochondrion
|
— | — | — | — |
28-59
|
0.983
|
— | — |
0.000
|
— | — |
0.519
|
0.637
|
0.274
|
0.462
|
0.286
|
0.205
|
0.177
|
0.247
|
0.272
|
0.268
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011573
|
1.000
|
1.000
|
Hsc_gene_23578.t1
|
— | — |
Q17574.1 Methionine synthase reductase [Caenorhabditis elegans]
|
KAI3420966.1 FAD binding domain [Globodera pallida]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0003674_0.772|GO:0008150_0.718|GO:0005575_0.663|GO:0110165_0.643|GO:0003824_0.639|GO:0016491_0.583|GO:0005622_0.576|GO:0008152_0.554|GO:0016020_0.537|GO:0009987_0.520|GO:0043226_0.512
|
IPR001433+25-82+|IPR001709+24-43_69-80+|IPR039261+20-217_21-218+
|
— |
PF00175+25-82+Oxidoreductase_NAD-binding_domain
|
— |
PTHR19384+20-218+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3;97-150
|
2.000
|
4-96;151-218
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.649
|
24244.570
|
4.742
|
-8.000
|
27.064
|
9.174
|
44.954
|
55.046
|
12.385
|
14.679
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
red
|
98.415
|
101.595
|
88.618
|
112.201
|
111.532
|
78.676
|
135.825
|
86.267
|
9.694
|
155.278
|
92.885
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.426
|
— |
0.449
|
— |
-0.489
|
0.798
|
— |
0.798
|
-4.179
|
3.795
|
— | — | — |
No JSON data available for plots.