Hg_chrom7_TN10mRNA_14559
Organism: Heterodera glycines Gene Locus: chr7:7316488-7321484 Feature type: polypeptideProtein Sequence
Length: 552
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.737 | 1.138 | 0.988 | 1.124 | 1.147 | 1.068 | 0.755 | 0.815 | 1.208 | 1.322 | 0.549 | 2.131 | 1.208 | 0.766 | 1.331 | 0.621 | 1.455 | 0.988 | 0.975 | 0.799 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13739
|
— | — |
1.222
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.948
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum|lysosome_vacuole|golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.112
|
0.128
|
0.021
|
0.210
|
0.705
|
0.602
|
0.697
|
0.046
|
0.413
|
0.020
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004628
|
2.000
|
1.000
|
Hsc_gene_23553.t1
|
— | — |
G5EBH1.1 Probable phospholipid-transporting ATPase tat-5 [Caenorhabditis elegans]
|
KAF7637459.1 Phospholipid-transporting ATPase [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.845|GO:0110165_0.845|GO:0008150_0.832|GO:0071944_0.777|GO:0005886_0.763|GO:0016020_0.763|GO:0009987_0.697|GO:0005622_0.696|GO:0005737_0.648|GO:0043226_0.641|GO:0043229_0.612|GO:0003674_0.587|GO:0043227_0.578|GO:0043231_0.572|GO:0065007_0.552
|
IPR003812+409-506_409-546+|IPR008250+188-321+|IPR023298+135-368+|IPR036597+391-545_406-533+
|
— |
PF00122+182-394+E1-E2_ATPase|PF02661+409-506+Fic/DOC_family
|
— |
PTHR24092+134-366+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-6;396-446
|
2.000
|
7-395;447-552
|
9vdn_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.552
|
62328.430
|
5.285
|
-7.500
|
24.094
|
9.964
|
46.377
|
53.623
|
11.775
|
12.319
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
531.721
|
387.956
|
800.910
|
725.925
|
668.515
|
626.455
|
581.466
|
591.737
|
279.119
|
473.330
|
390.097
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.817
|
0.767
|
— |
-0.151
|
— | — | — | — | — | — | — | — |
7.213
|
No JSON data available for plots.