Hg_chrom7_TN10mRNA_14561
Organism: Heterodera glycines Gene Locus: chr7:7325512-7326313 Feature type: polypeptideProtein Sequence
Length: 143
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.301 | 0.325 | 1.144 | 0.482 | 1.282 | 1.434 | 0.999 | 0.35 | 0.777 | 1.796 | 1.06 | 1.234 | 0.777 | 1.345 | 1.57 | 0.3 | 0.688 | 0.954 | 0.0 | 0.411 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13741
|
— | — |
1.778
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
3.000
|
2.000
|
3.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.953
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
plastid|peroxisome
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.261
|
0.436
|
0.735
|
0.439
|
0.547
|
0.513
|
0.354
|
0.961
|
0.316
|
0.039
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004630
|
2.000
|
1.000
|
Hsc_gene_2086.t1
|
Hsc_gene_2086.t1;Hsc_gene_23577.t1
|
— |
Q13825.1 Methylglutaconyl-CoA hydratase, mitochondrial [Homo sapiens]
|
KAH7723469.1 CBN-ECH-5 protein [Aphelenchus avenae]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.768|GO:0008150_0.711|GO:0003674_0.697|GO:0110165_0.695|GO:0009987_0.645|GO:0005622_0.631|GO:0016020_0.615|GO:0005737_0.578|GO:0043226_0.576|GO:0008152_0.575|GO:0003824_0.564|GO:0044237_0.559|GO:0043229_0.557|GO:0043227_0.517
|
IPR001753+13-142+|IPR014748+85-143+|IPR029045+11-142+
|
— |
PF00378+13-142+Enoyl-CoA_hydratase/isomerase
|
G3DSA:1.10.12.10:FF:000001+84-143+Probable_enoyl-CoA_hydratase,_mitochondrial
|
PTHR11941+13-142+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-9
|
1.000
|
10-143
|
2zqr_F
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.627
|
15648.130
|
7.824
|
1.500
|
29.371
|
4.895
|
42.657
|
57.343
|
15.385
|
13.986
|
48.252
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
blue
|
373.300
|
17.221
|
16.507
|
27.746
|
63.989
|
41.138
|
149.500
|
97.681
|
23.191
|
1460.628
|
844.583
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.855
|
1.173
|
-0.622
|
1.874
|
1.145
|
0.758
|
-6.046
|
— |
-4.179
|
— | — |
No JSON data available for plots.