Hg_chrom7_TN10mRNA_14562
Organism: Heterodera glycines Gene Locus: chr7:7326894-7330511 Feature type: polypeptideProtein Sequence
Length: 459
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.785 | 0.557 | 0.832 | 1.202 | 0.98 | 1.899 | 0.519 | 1.416 | 0.968 | 1.56 | 0.561 | 1.282 | 1.755 | 1.257 | 1.467 | 0.965 | 0.964 | 0.858 | 0.67 | 0.384 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13742
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
cytoplasm|mitochondrion
|
— | — |
7-34
|
0.976
|
— | — | — | — |
0.000
|
— | — |
0.227
|
0.784
|
0.111
|
0.705
|
0.053
|
0.054
|
0.076
|
0.015
|
0.139
|
0.180
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004631
|
1.000
|
2.000
|
Hsc_gene_2085.t1;Hsc_gene_23579.t1
|
Hsc_gene_2085.t1;Hsc_gene_23579.t1
|
— |
Q17574.1 Methionine synthase reductase [Caenorhabditis elegans]
|
KAI3420966.1 FAD binding domain [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0008150_0.786|GO:0003674_0.771|GO:0005575_0.731|GO:0110165_0.727|GO:0005622_0.659|GO:0003824_0.628|GO:0009987_0.627|GO:0016020_0.608|GO:0008152_0.592|GO:0016491_0.584|GO:0043226_0.578|GO:0005737_0.576|GO:0043229_0.559|GO:0065007_0.534|GO:0043227_0.526|GO:0043231_0.506
|
IPR001709+340-349_402-421+|IPR003097+147-303+|IPR017927+91-369+|IPR017938+147-359+|IPR023173+157-287+|IPR039261+396-455_398-451+
|
— |
PF00667+147-303+FAD_binding_domain
|
G3DSA:1.20.990.10:FF:000007+156-287+Methionine_synthase_reductase
|
PTHR19384+96-451+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-459
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.651
|
52128.070
|
7.691
|
8.500
|
24.183
|
11.329
|
46.623
|
53.377
|
13.725
|
10.458
|
46.405
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
319.226
|
351.816
|
323.656
|
435.267
|
449.013
|
403.584
|
487.801
|
395.988
|
44.649
|
295.457
|
187.968
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.350
|
0.170
|
0.537
|
— | — |
0.284
|
— |
0.443
|
-2.859
|
— | — | — | — |
No JSON data available for plots.