Hg_chrom7_TN10mRNA_14563
Organism: Heterodera glycines Gene Locus: chr7:7330802-7333369 Feature type: polypeptideProtein Sequence
Length: 423
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.88 | 1.319 | 1.118 | 0.163 | 0.433 | 1.819 | 0.788 | 0.473 | 0.841 | 0.735 | 1.863 | 0.834 | 1.051 | 2.637 | 0.627 | 0.743 | 1.201 | 0.788 | 0.0 | 0.487 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13743
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
cytoplasm
|
— |
PKPS,KKKKKK,KKGGKAPPPPPAKKMGR,KKNVTNADKLKDFFHKRRP,DKLKDFFHKRRPSKSIIRTPKN
|
— | — | — | — | — | — |
0.000
|
— | — |
0.174
|
0.047
|
0.023
|
0.448
|
0.318
|
0.193
|
0.172
|
0.013
|
0.442
|
0.270
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004545
|
3.000
|
0.000
|
0.000
|
— | — | — | — |
No
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR004296+211-226_253-281_303-321_344-364+
|
— |
PF03057+211-226_253-281_303-321_344-364+DUF236_repeat
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
39-423
|
1.000
|
1-38
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.893
|
45896.400
|
10.582
|
30.000
|
25.059
|
6.383
|
50.355
|
49.645
|
16.312
|
8.747
|
57.920
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
699.995
|
86.612
|
123.271
|
165.428
|
452.086
|
1978.679
|
414.209
|
2130.737
|
115.441
|
969.264
|
603.340
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.796
|
0.537
|
1.419
|
2.144
|
-2.245
|
— |
-2.215
|
— | — | — | — | — |
No JSON data available for plots.