Hg_chrom7_TN10mRNA_14567
Organism: Heterodera glycines Gene Locus: chr7:7341393-7344815 Feature type: polypeptideProtein Sequence
Length: 389
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.986 | 1.375 | 0.795 | 0.798 | 1.414 | 1.516 | 0.581 | 1.028 | 1.2 | 1.251 | 0.467 | 1.059 | 1.143 | 1.335 | 1.259 | 1.028 | 0.506 | 0.74 | 1.582 | 1.059 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13747
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
0.968
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.693
|
0.163
|
0.005
|
0.614
|
0.064
|
0.063
|
0.135
|
0.095
|
0.037
|
0.132
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003684
|
3.000
|
0.000
|
0.000
|
— | — |
O24304.1 Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [Pisum sativum]
|
KAI1704429.1 protein prenyltransferase alpha subunit repeat domain-containing protein [Ditylenchus destructor]
|
No
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008318|GO:0018342
|
GO:0005575_0.835|GO:0003674_0.782|GO:0008150_0.779|GO:0009987_0.725|GO:0003824_0.648|GO:0110165_0.625|GO:0016740_0.609|GO:0140096_0.600|GO:0005622_0.575|GO:0004659_0.568|GO:0008318_0.568|GO:0016765_0.568|GO:0065007_0.528|GO:0032991_0.518|GO:0050789_0.512|GO:0050794_0.501
|
IPR002088+81-114_83-111_115-149_117-146_150-184_152-178_191-225+
|
— |
PF01239+83-111_117-146_152-178+Protein_prenyltransferase_alpha_subunit_repeat
|
— |
PTHR11129+21-288+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
387-389
|
1.000
|
1-386
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.544
|
44202.830
|
4.893
|
-10.000
|
24.165
|
11.825
|
46.272
|
53.728
|
11.311
|
12.853
|
48.072
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
greenyellow
|
1291.272
|
613.338
|
850.006
|
865.980
|
846.396
|
805.979
|
929.442
|
571.739
|
388.346
|
3301.974
|
2053.276
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.241
|
0.361
|
0.136
|
— | — |
0.217
|
-0.601
|
0.845
|
-3.192
|
— | — | — | — |
No JSON data available for plots.