Hg_chrom7_TN10mRNA_14569
Organism: Heterodera glycines Gene Locus: chr7:7353512-7356557 Feature type: polypeptideProtein Sequence
Length: 440
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.793 | 1.004 | 1.405 | 0.862 | 0.758 | 0.991 | 0.785 | 1.818 | 1.061 | 1.259 | 0.344 | 0.535 | 1.831 | 0.743 | 1.484 | 1.396 | 0.782 | 0.861 | 0.175 | 1.337 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13748
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.884
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
2-93
|
0.801
|
45-106
|
0.983
|
— | — |
0.000
|
— | — |
0.424
|
0.278
|
0.063
|
0.582
|
0.240
|
0.228
|
0.305
|
0.062
|
0.142
|
0.203
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011576
|
1.000
|
1.000
|
Hsc_gene_8083.t1
|
— | — |
Q147X3.1 N-alpha-acetyltransferase 30 [Homo sapiens]
|
KHJ90424.1 acetyltransferase, GNAT family [Oesophagostomum dentatum]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004596|GO:0016747|GO:0017196
|
GO:0005575_0.895|GO:0110165_0.895|GO:0003674_0.785|GO:0005622_0.767|GO:0008150_0.678|GO:0005737_0.673|GO:0003824_0.616|GO:0016740_0.587|GO:0016020_0.584|GO:0016746_0.576|GO:0016747_0.559|GO:0008080_0.556|GO:0016407_0.556|GO:0016410_0.556
|
IPR000182+216-371_227-347+|IPR016181+179-357+|IPR044542+192-375+
|
— |
PF00583+227-347+Acetyltransferase_(GNAT)_family
|
— |
PTHR45896+192-375+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-440
|
7rb3_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.594
|
49510.300
|
6.074
|
-4.000
|
25.455
|
15.000
|
48.182
|
51.818
|
13.182
|
12.273
|
52.045
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
410.545
|
250.069
|
254.465
|
287.651
|
400.275
|
360.105
|
572.274
|
250.793
|
349.420
|
643.206
|
517.298
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.204
|
— |
0.286
|
0.446
|
— |
0.680
|
-0.627
|
1.334
|
— | — | — | — | — |
No JSON data available for plots.