SCN Proteipedia

Hg_chrom7_TN10mRNA_14570

Organism: Heterodera glycines Gene Locus: chr7:7357508-7362097 Feature type: polypeptide

Protein Sequence

Length: 467

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.195	0.548	0.895	0.591	0.535	1.098	0.994	1.82	0.857	1.186	0.292	1.889	1.844	1.565	1.879	0.948	0.597	0.844	0.988	0.693	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13749	—	—	1.000	1.000	1.000	1.000	1.000	1.000	2.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	6-Not_Clustered	0.325

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	RHRR	—	—	52-89	0.987	—	—	0.005	—	—	0.255	0.293	0.009	0.625	0.135	0.333	0.125	0.099	0.496	0.105

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011577	1.000	1.000	Hsc_gene_8082.t1	Hsc_gene_8082.t1	—	P23049.2 Tyrosine-protein kinase transforming protein SEA [Avian erythroblastosis virus (strain S13)]	KAI1714215.1 protein tyrosine kinase domain-containing protein [Ditylenchus destructor]	No	-0.040

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004713\|GO:0005524\|GO:0006468	GO:0008150_0.948\|GO:0009987_0.874\|GO:0005575_0.825\|GO:0110165_0.825\|GO:0065007_0.801\|GO:0050789_0.788\|GO:0050794_0.738\|GO:0003674_0.717\|GO:0050896_0.708\|GO:0005622_0.641\|GO:0007154_0.633\|GO:0051716_0.631\|GO:0032501_0.628\|GO:0023052_0.626\|GO:0007165_0.617\|GO:0003824_0.614\|GO:0016740_0.607\|GO:0032502_0.601\|GO:0048856_0.584\|GO:0140096_0.572\|GO:0008152_0.571\|GO:0007275_0.568\|GO:0048518_0.562\|GO:0044237_0.557\|GO:0016020_0.538\|GO:0016772_0.537\|GO:0048869_0.533\|GO:0030154_0.532\|GO:0043170_0.527\|GO:0048522_0.527\|GO:0071944_0.525\|GO:0016773_0.518\|GO:0071840_0.512\|GO:0048468_0.509\|GO:0016043_0.505\|GO:0016301_0.505\|GO:0004672_0.501\|GO:0005886_0.501\|GO:0048519_0.501	IPR000719+146-419+\|IPR001245+147-418_234-247_271-289_345-367_389-411+\|IPR008266+277-289+\|IPR011009+140-440+\|IPR017441+152-179+\|IPR020635+146-418+\|IPR050122+140-419+	SM00219+146-418+	PF07714+147-418+Protein_tyrosine_and_serine/threonine_kinase	G3DSA:1.10.510.10:FF:000554+237-428+Predicted_protein	PTHR24416+140-419+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	62-125	2.000	1-61;126-467	7mob_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.913	51887.560	9.894	22.500	22.912	13.919	39.829	60.171	14.775	8.137	51.606

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	turquoise	1495.279	887.192	995.770	1851.153	1721.908	2677.271	464.878	1137.982	212.879	2731.127	1651.878

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	0.924	1.003	—	0.653	-2.518	-1.342	-1.150	-3.804	—	—	—	—

No JSON data available for plots.

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