SCN Proteipedia

Hg_chrom7_TN10mRNA_14574

Organism: Heterodera glycines Gene Locus: chr7:7381343-7384916 Feature type: polypeptide

Protein Sequence

Length: 538

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.756	1.081	0.71	1.474	2.881	1.049	0.929	2.23	0.826	1.055	1.127	0.765	1.342	0.465	1.176	0.584	0.731	0.394	0.572	0.547	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13753	—	—	1.111	1.000	1.000	1.000	2.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	—	39-59	0.991	—	—	—	—	0.000	—	—	0.344	0.025	0.007	0.257	0.537	0.298	0.188	0.092	0.541	0.065

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000438	7.000	1.000	Hsc_gene_22379.t1	—	—	—	—	No	-0.380

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.816\|GO:0005575_0.715\|GO:0110165_0.715\|GO:0016020_0.680\|GO:0009987_0.653\|GO:0043226_0.647\|GO:0003674_0.644\|GO:0005488_0.633\|GO:0005622_0.632\|GO:0043229_0.606\|GO:0043227_0.561\|GO:0043231_0.512\|GO:0065007_0.512\|GO:0050789_0.506\|GO:0097159_0.502	IPR013087+313-335_313-340_314-335_315-335_341-363_341-368_343-363_369-391_369-396_371-391_397-419_397-424_399-419_425-447_425-452_427-447_453-475_453-480_455-475_481-503_481-508_483-503_509-538+\|IPR036236+314-363_349-406_396-428_433-490_475-527+	SM00355+313-335_341-363_369-391_397-419_425-447_453-475_481-503+	PF00096+314-335_369-391_397-419_453-475_481-503+Zinc_finger,_C2H2_type	G3DSA:3.30.160.60:FF:000060+312-338+zinc_finger_protein_436\|G3DSA:3.30.160.60:FF:000100+507-531+Zinc_finger_45-like\|G3DSA:3.30.160.60:FF:000185+365-390+zinc_finger_protein_319\|G3DSA:3.30.160.60:FF:000512+339-364_424-446+zinc_finger_protein_197_isoform_X1\|G3DSA:3.30.160.60:FF:002343+447-478+Zinc_finger_protein_33A\|G3DSA:3.30.160.60:FF:002716+394-423_479-506+Zinc_finger_protein_212	PTHR24408+276-473+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	145-287;537-538	2.000	1-144;288-536	2i13_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.893	61760.430	4.756	-31.000	38.848	11.896	56.134	43.866	17.658	21.190	40.706

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	grey	25.172	12.968	10.385	11.549	21.158	20.679	90.691	6.500	19.350	30.392	25.660

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	—	—	0.837	—	2.142	-1.780	3.947	—	—	—	—	—

No JSON data available for plots.

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